Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | Q7258_RS05640 | Genome accession | NZ_CP131444 |
| Coordinates | 1114444..1115394 (+) | Length | 316 a.a. |
| NCBI ID | WP_002866164.1 | Uniprot ID | Q9ALT6 |
| Organism | Campylobacter jejuni strain S27 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1091039..1127428 | 1114444..1115394 | within | 0 |
Gene organization within MGE regions
Location: 1091039..1127428
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q7258_RS05510 (Q7258_05510) | pglI | 1091039..1091968 (-) | 930 | WP_070317066.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| Q7258_RS05515 (Q7258_05515) | pglH | 1091961..1093040 (-) | 1080 | WP_075888376.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| Q7258_RS05520 (Q7258_05520) | pglK | 1093037..1094731 (-) | 1695 | WP_070317065.1 | ABC-type lipopolysaccharide transporter PglK | - |
| Q7258_RS05525 (Q7258_05525) | galE | 1094725..1095711 (-) | 987 | WP_070317064.1 | UDP-glucose 4-epimerase GalE | - |
| Q7258_RS05530 (Q7258_05530) | - | 1095770..1096564 (-) | 795 | WP_070317063.1 | 3'-5' exonuclease | - |
| Q7258_RS05535 (Q7258_05535) | waaC | 1096630..1097658 (+) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| Q7258_RS05540 (Q7258_05540) | htrB | 1097648..1098526 (+) | 879 | WP_002801091.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| Q7258_RS05545 (Q7258_05545) | - | 1098523..1099224 (+) | 702 | WP_002877056.1 | glycosyltransferase family 2 protein | - |
| Q7258_RS05550 (Q7258_05550) | rfbA | 1099235..1100113 (+) | 879 | WP_002866148.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| Q7258_RS05555 (Q7258_05555) | rfbB | 1100113..1101144 (+) | 1032 | WP_002866149.1 | dTDP-glucose 4,6-dehydratase | - |
| Q7258_RS05560 (Q7258_05560) | wlaRA | 1101147..1101572 (+) | 426 | WP_012006732.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| Q7258_RS05565 (Q7258_05565) | wlaRB | 1101594..1102001 (+) | 408 | WP_002866152.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| Q7258_RS05570 (Q7258_05570) | - | 1101991..1102425 (+) | 435 | WP_032603537.1 | N-acetyltransferase | - |
| Q7258_RS05575 (Q7258_05575) | wlaRD | 1102455..1103273 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| Q7258_RS05580 (Q7258_05580) | - | 1103292..1104356 (+) | 1065 | WP_002866155.1 | glycosyltransferase family 2 protein | - |
| Q7258_RS05585 (Q7258_05585) | - | 1104368..1105420 (+) | 1053 | WP_041176357.1 | glycosyltransferase family A protein | - |
| Q7258_RS05590 (Q7258_05590) | wlaRG | 1105386..1106471 (+) | 1086 | WP_032603539.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| Q7258_RS05595 (Q7258_05595) | - | 1106505..1107635 (-) | 1131 | WP_305091246.1 | DUF2972 domain-containing protein | - |
| Q7258_RS05600 (Q7258_05600) | - | 1107601..1108893 (-) | 1293 | WP_002915795.1 | RNA-guided endonuclease TnpB family protein | - |
| Q7258_RS05605 (Q7258_05605) | - | 1108880..1109518 (-) | 639 | WP_002782963.1 | IS607-like element ISChh1 family transposase | - |
| Q7258_RS05610 (Q7258_05610) | - | 1109605..1109820 (-) | 216 | WP_305091247.1 | hypothetical protein | - |
| Q7258_RS05615 (Q7258_05615) | - | 1109817..1110677 (-) | 861 | WP_166738763.1 | hypothetical protein | - |
| Q7258_RS05620 (Q7258_05620) | - | 1110886..1111659 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| Q7258_RS05625 (Q7258_05625) | wlaTB | 1111652..1112608 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| Q7258_RS05630 (Q7258_05630) | wlaTC | 1112605..1113564 (+) | 960 | WP_012006735.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| Q7258_RS05635 (Q7258_05635) | - | 1113567..1114385 (-) | 819 | WP_002866163.1 | glycosyltransferase family 2 protein | - |
| Q7258_RS05640 (Q7258_05640) | waaF | 1114444..1115394 (+) | 951 | WP_002866164.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| Q7258_RS05645 (Q7258_05645) | - | 1115445..1116944 (+) | 1500 | WP_002877116.1 | MBOAT family protein | - |
| Q7258_RS05650 (Q7258_05650) | - | 1117092..1118069 (+) | 978 | WP_002866168.1 | hypothetical protein | - |
| Q7258_RS05655 (Q7258_05655) | gmhA | 1118073..1118633 (-) | 561 | WP_002877119.1 | D-sedoheptulose 7-phosphate isomerase | - |
| Q7258_RS05660 (Q7258_05660) | rfaE1 | 1118630..1120015 (-) | 1386 | WP_002877121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| Q7258_RS05665 (Q7258_05665) | rfaD | 1120008..1120961 (-) | 954 | WP_002877123.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| Q7258_RS05670 (Q7258_05670) | gmhB | 1120962..1121522 (-) | 561 | WP_002877124.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| Q7258_RS05675 (Q7258_05675) | - | 1121604..1121906 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| Q7258_RS05680 (Q7258_05680) | ccoS | 1121929..1122135 (-) | 207 | WP_002877126.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| Q7258_RS05685 (Q7258_05685) | - | 1122132..1124489 (-) | 2358 | WP_079264324.1 | heavy metal translocating P-type ATPase | - |
| Q7258_RS05690 (Q7258_05690) | rho | 1124598..1125896 (+) | 1299 | WP_305091248.1 | transcription termination factor Rho | - |
| Q7258_RS05695 (Q7258_05695) | dnaX | 1125899..1127428 (+) | 1530 | WP_305091249.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36378.95 Da Isoelectric Point: 10.3102
>NTDB_id=862454 Q7258_RS05640 WP_002866164.1 1114444..1115394(+) (waaF) [Campylobacter jejuni strain S27]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=862454 Q7258_RS05640 WP_002866164.1 1114444..1115394(+) (waaF) [Campylobacter jejuni strain S27]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.249 |
99.051 |
0.934 |