Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   Q7258_RS05260 Genome accession   NZ_CP131444
Coordinates   1041171..1041473 (+) Length   100 a.a.
NCBI ID   WP_305091240.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S27     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036171..1046473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7258_RS05235 (Q7258_05235) rpsR 1036533..1036793 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  Q7258_RS05240 (Q7258_05240) lon 1036854..1039229 (-) 2376 WP_002866098.1 endopeptidase La -
  Q7258_RS05245 (Q7258_05245) - 1039246..1039893 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  Q7258_RS05250 (Q7258_05250) fliW 1040054..1040443 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  Q7258_RS05255 (Q7258_05255) proC 1040443..1041174 (+) 732 WP_126224146.1 pyrroline-5-carboxylate reductase Machinery gene
  Q7258_RS05260 (Q7258_05260) ctsT 1041171..1041473 (+) 303 WP_305091240.1 hypothetical protein Machinery gene
  Q7258_RS05265 (Q7258_05265) - 1041470..1042132 (+) 663 WP_002866103.1 hypothetical protein -
  Q7258_RS05270 (Q7258_05270) - 1042129..1042581 (+) 453 WP_032603535.1 hypothetical protein -
  Q7258_RS05275 (Q7258_05275) hemD 1042578..1043207 (-) 630 WP_002866105.1 uroporphyrinogen-III synthase -
  Q7258_RS05280 (Q7258_05280) thiE 1043185..1043817 (-) 633 WP_057042821.1 thiamine phosphate synthase -
  Q7258_RS05285 (Q7258_05285) thiD 1043807..1044619 (-) 813 WP_002864255.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q7258_RS05290 (Q7258_05290) - 1044616..1045302 (-) 687 WP_038817202.1 endonuclease III domain-containing protein -
  Q7258_RS05295 (Q7258_05295) - 1045299..1046061 (-) 763 Protein_1026 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12174.41 Da        Isoelectric Point: 9.5913

>NTDB_id=862452 Q7258_RS05260 WP_305091240.1 1041171..1041473(+) (ctsT) [Campylobacter jejuni strain S27]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRLYKLQEELYEKPIFKTIILQTSALKPIILQEQFVNDG
IFQFQKLYFQDQNYSVYFKK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=862452 Q7258_RS05260 WP_305091240.1 1041171..1041473(+) (ctsT) [Campylobacter jejuni strain S27]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTAAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAATTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

96

100

0.96