Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   Q7259_RS06260 Genome accession   NZ_CP131442
Coordinates   1181706..1182665 (+) Length   319 a.a.
NCBI ID   WP_305113277.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S33     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176706..1187665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7259_RS06230 (Q7259_06230) neuC 1177296..1178420 (+) 1125 WP_025399082.1 UDP-N-acetylglucosamine 2-epimerase -
  Q7259_RS06235 (Q7259_06235) - 1178413..1179030 (+) 618 WP_167562429.1 glycosyltransferase -
  Q7259_RS06240 (Q7259_06240) - 1179027..1179359 (+) 333 WP_019260376.1 hypothetical protein -
  Q7259_RS06245 (Q7259_06245) - 1179356..1180021 (+) 666 WP_002869017.1 cytidylyltransferase domain-containing protein -
  Q7259_RS06250 (Q7259_06250) - 1180009..1180833 (+) 825 WP_305113275.1 CatB-related O-acetyltransferase -
  Q7259_RS06255 (Q7259_06255) waaV 1180835..1181647 (-) 813 WP_305113276.1 glycosyltransferase family 2 protein -
  Q7259_RS06260 (Q7259_06260) waaF 1181706..1182665 (+) 960 WP_305113277.1 lipopolysaccharide heptosyltransferase II Regulator
  Q7259_RS06265 (Q7259_06265) gmhA 1182646..1183206 (-) 561 WP_126320749.1 D-sedoheptulose 7-phosphate isomerase -
  Q7259_RS06270 (Q7259_06270) rfaE1 1183203..1184588 (-) 1386 WP_002896702.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  Q7259_RS06275 (Q7259_06275) rfaD 1184581..1185534 (-) 954 WP_305113278.1 ADP-glyceromanno-heptose 6-epimerase -
  Q7259_RS06280 (Q7259_06280) gmhB 1185535..1186096 (-) 562 Protein_1219 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  Q7259_RS06285 (Q7259_06285) - 1186177..1186479 (+) 303 WP_002852762.1 cytochrome c -
  Q7259_RS06290 (Q7259_06290) ccoS 1186502..1186708 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36688.24 Da        Isoelectric Point: 10.3737

>NTDB_id=862427 Q7259_RS06260 WP_305113277.1 1181706..1182665(+) (waaF) [Campylobacter jejuni strain S33]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFT
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGSTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=862427 Q7259_RS06260 WP_305113277.1 1181706..1182665(+) (waaF) [Campylobacter jejuni strain S33]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCCCTATCTTTACGTAAAGAACTTGGTAAAATCGATCTTAGCTTTACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCTCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(97-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.671

100

0.947