Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   Q7260_RS05915 Genome accession   NZ_CP131440
Coordinates   1115304..1116257 (+) Length   317 a.a.
NCBI ID   WP_002869014.1    Uniprot ID   A0A5Y9JB79
Organism   Campylobacter jejuni strain S36     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110304..1121257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7260_RS05890 (Q7260_05890) neuC 1110882..1112006 (+) 1125 WP_220522657.1 UDP-N-acetylglucosamine 2-epimerase -
  Q7260_RS05895 (Q7260_05895) - 1111999..1112946 (+) 948 WP_002896736.1 glycosyltransferase -
  Q7260_RS05900 (Q7260_05900) - 1112943..1113608 (+) 666 WP_002871705.1 cytidylyltransferase domain-containing protein -
  Q7260_RS05905 (Q7260_05905) - 1113596..1114426 (+) 831 WP_178894295.1 CatB-related O-acetyltransferase -
  Q7260_RS05910 (Q7260_05910) - 1114418..1115245 (-) 828 WP_002869015.1 glycosyltransferase family 2 protein -
  Q7260_RS05915 (Q7260_05915) waaF 1115304..1116257 (+) 954 WP_002869014.1 lipopolysaccharide heptosyltransferase II Regulator
  Q7260_RS05920 (Q7260_05920) - 1116264..1117019 (-) 756 WP_002869013.1 glycosyltransferase family 25 protein -
  Q7260_RS05925 (Q7260_05925) gmhA 1117019..1117579 (-) 561 WP_057033783.1 D-sedoheptulose 7-phosphate isomerase -
  Q7260_RS05930 (Q7260_05930) rfaE1 1117576..1118961 (-) 1386 WP_052800197.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  Q7260_RS05935 (Q7260_05935) rfaD 1118954..1119907 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  Q7260_RS05940 (Q7260_05940) gmhB 1119908..1120468 (-) 561 WP_002911679.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  Q7260_RS05945 (Q7260_05945) - 1120550..1120852 (+) 303 WP_002852762.1 cytochrome c -
  Q7260_RS05950 (Q7260_05950) ccoS 1120875..1121081 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36457.07 Da        Isoelectric Point: 10.2322

>NTDB_id=862400 Q7260_RS05915 WP_002869014.1 1115304..1116257(+) (waaF) [Campylobacter jejuni strain S36]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=862400 Q7260_RS05915 WP_002869014.1 1115304..1116257(+) (waaF) [Campylobacter jejuni strain S36]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y9JB79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.586

99.054

0.937