Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   KI212_RS10900 Genome accession   NZ_AP024589
Coordinates   2244264..2244929 (-) Length   221 a.a.
NCBI ID   WP_059107058.1    Uniprot ID   -
Organism   Staphylococcus auricularis strain JCM 2421     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2239264..2249929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI212_RS10885 (JCM2421_21590) - 2240517..2242502 (-) 1986 WP_059107061.1 ABC transporter permease -
  KI212_RS10890 (JCM2421_21600) - 2242504..2243253 (-) 750 WP_059107060.1 ABC transporter ATP-binding protein -
  KI212_RS10895 (JCM2421_21610) braS 2243357..2244250 (-) 894 WP_180991909.1 sensor histidine kinase Regulator
  KI212_RS10900 (JCM2421_21620) braR 2244264..2244929 (-) 666 WP_059107058.1 response regulator transcription factor Regulator
  KI212_RS10905 (JCM2421_21630) xylB 2245246..2246751 (+) 1506 WP_059107057.1 xylulokinase -
  KI212_RS10910 (JCM2421_21640) - 2247036..2247617 (+) 582 WP_059107056.1 thiamine phosphate synthase -
  KI212_RS10915 (JCM2421_21650) thiO 2247617..2248738 (+) 1122 WP_059107104.1 glycine oxidase ThiO -
  KI212_RS10920 (JCM2421_21660) thiS 2248722..2248922 (+) 201 WP_059107055.1 sulfur carrier protein ThiS -
  KI212_RS10925 (JCM2421_21670) - 2248924..2249691 (+) 768 WP_059107054.1 thiazole synthase -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25731.45 Da        Isoelectric Point: 4.5414

>NTDB_id=86239 KI212_RS10900 WP_059107058.1 2244264..2244929(-) (braR) [Staphylococcus auricularis strain JCM 2421]
MKILIVEDDFTIAESLQNELSKWHYDVMIAEDFNEIMSLFQSYDPHLVVLDITLPSFNGYHWCQEIRKTSNVPILFISSQ
SDDMDKIMAIQMGADDYIEKPFSLSLATAKIQALIRRTYNFAVDKNELEVKGCILSLDEAKVSYEDQTEQLSFTELQILS
LLFQHEGQYVSRTALIEKCWESEYFIDDNTLAVNMTRLRKKLRRLGLEDFIQTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=86239 KI212_RS10900 WP_059107058.1 2244264..2244929(-) (braR) [Staphylococcus auricularis strain JCM 2421]
ATGAAAATTCTCATTGTCGAAGACGATTTTACCATTGCTGAAAGTTTACAAAATGAACTTAGTAAATGGCACTATGATGT
AATGATCGCCGAAGATTTTAATGAAATCATGAGTCTTTTTCAATCATATGACCCACATCTCGTTGTGTTAGATATTACGT
TACCATCATTTAACGGTTATCATTGGTGCCAAGAAATACGTAAAACGTCCAATGTGCCGATACTCTTTATTAGTTCACAA
TCGGATGATATGGATAAGATCATGGCGATACAAATGGGAGCCGATGACTATATCGAAAAGCCGTTTAGTTTATCTCTCGC
AACGGCGAAAATCCAAGCGCTCATACGACGGACTTATAATTTTGCAGTCGACAAAAATGAACTCGAAGTGAAAGGTTGTA
TCTTATCACTCGATGAAGCAAAAGTGTCATACGAAGATCAAACTGAACAACTATCATTTACAGAATTACAAATTCTGTCA
TTATTATTCCAACATGAAGGTCAGTATGTAAGTCGTACCGCACTCATCGAAAAATGCTGGGAATCTGAGTATTTTATCGA
TGACAATACGCTTGCAGTAAACATGACACGGTTACGTAAGAAATTACGTCGTCTAGGGTTAGAGGACTTTATTCAAACAA
AGAAAAATGTAGGGTATAAAGTGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

71.946

100

0.719


Multiple sequence alignment