Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI212_RS09905 Genome accession   NZ_AP024589
Coordinates   2028630..2030006 (-) Length   458 a.a.
NCBI ID   WP_059107342.1    Uniprot ID   A0AAP8PP19
Organism   Staphylococcus auricularis strain JCM 2421     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2023630..2035006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI212_RS09890 (JCM2421_19730) cysE 2024670..2025320 (-) 651 WP_083498179.1 serine O-acetyltransferase -
  KI212_RS09895 (JCM2421_19740) gltX 2025628..2027082 (-) 1455 WP_059107344.1 glutamate--tRNA ligase -
  KI212_RS09900 (JCM2421_19750) - 2027346..2028401 (-) 1056 WP_059107343.1 PIN/TRAM domain-containing protein -
  KI212_RS09905 (JCM2421_19760) radA 2028630..2030006 (-) 1377 WP_059107342.1 DNA repair protein RadA Machinery gene
  KI212_RS09910 (JCM2421_19770) - 2030440..2032902 (-) 2463 WP_059107341.1 ATP-dependent Clp protease ATP-binding subunit -
  KI212_RS09915 (JCM2421_19780) - 2032914..2033924 (-) 1011 WP_059107340.1 protein arginine kinase -
  KI212_RS09920 (JCM2421_19790) - 2033914..2034468 (-) 555 WP_059107339.1 UvrB/UvrC motif-containing protein -
  KI212_RS09925 (JCM2421_19800) - 2034486..2034947 (-) 462 WP_059107338.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50685.06 Da        Isoelectric Point: 6.9501

>NTDB_id=86235 KI212_RS09905 WP_059107342.1 2028630..2030006(-) (radA) [Staphylococcus auricularis strain JCM 2421]
MAKKKVIYECMACGYQSPKWMGKCPNCGAWNQMDEIVEQKETSPKHGVRSQTHNAKVQKLNDVKQEQTPRIKSSSEEFNR
VLGGGIVKGSLVLIGGDPGIGKSTLLLQMCAALSKAYSVLYVTGEESLNQTKLRAERLEEDSSALNVFAETDLEVIHETV
RQLKPDMIVVDSIQTIYHPDISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVATMEGTRPLLVEVQALVTPTTFNNP
RRMATGIDYNRLNLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSVIVSTASSFQDKPVNGLDCYVGEVGLTGEV
RRVSRIEQRVQEAAKLGFERIIIPQTNIGGWEFPENIQVIGVSNVSEALACAFKQRQH

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=86235 KI212_RS09905 WP_059107342.1 2028630..2030006(-) (radA) [Staphylococcus auricularis strain JCM 2421]
TTGGCCAAGAAGAAAGTGATATACGAATGTATGGCCTGTGGCTACCAGTCGCCTAAATGGATGGGAAAATGTCCAAACTG
TGGTGCTTGGAACCAAATGGACGAGATTGTAGAGCAAAAAGAAACCAGTCCAAAACATGGTGTACGTAGCCAGACACACA
ATGCGAAAGTTCAAAAATTAAATGATGTTAAACAAGAACAGACGCCGCGCATTAAAAGTTCATCCGAAGAATTTAACCGT
GTGTTGGGCGGCGGAATTGTTAAGGGATCGCTCGTACTCATTGGTGGTGATCCAGGTATTGGGAAATCAACACTGCTCCT
TCAAATGTGTGCAGCGTTATCGAAAGCATACTCTGTCCTCTATGTCACAGGGGAAGAATCACTTAACCAAACTAAATTGA
GAGCAGAGCGACTTGAAGAAGATTCAAGCGCGCTGAATGTTTTTGCAGAAACAGACTTAGAAGTGATTCACGAAACCGTA
AGACAACTCAAACCAGATATGATTGTCGTGGACTCTATTCAAACGATTTATCATCCTGACATTAGCTCCGCGCCTGGTTC
TGTTTCCCAAGTCCGTGAAAGTACCCAAAGCTTGATGAATATCGCAAAACAAATGAATATCGCGACATTTATCGTTGGTC
ACGTGACAAAAGAAGGTCAAATTGCAGGGCCTAGATTATTAGAACACATGGTAGATACCGTGCTATATTTCGAAGGGGAC
GAACACCATGCGTATCGTATCTTGAGAGCAGTCAAAAACCGGTTTGGTTCTACGAATGAAATGGGTATCTTCGAGATGAA
ACAGAGTGGTTTGAAAGGCGTTAAAAACCCGTCTGAAATGTTCTTAGAAGAACGTTCTACCAATGTACCAGGCTCGACCA
TCGTCGCGACGATGGAAGGTACTCGGCCGTTATTAGTTGAAGTACAAGCCCTTGTCACACCAACCACATTTAATAATCCA
AGAAGGATGGCGACAGGAATTGATTACAACCGACTCAATTTATTAATGGCCGTACTAGAGAAGAAAGAAAACTACTTATT
ACAACAACAAGATGCCTACATTAAAGTCGCTGGTGGTGTTAGATTGACTGAACCTGCAGTAGACTTGAGTGTCATTGTAT
CGACAGCGTCTAGCTTCCAAGATAAACCGGTTAATGGTTTAGATTGTTATGTTGGTGAAGTGGGCTTAACCGGTGAAGTG
CGTCGCGTCTCTCGTATAGAACAGCGCGTACAAGAAGCGGCTAAACTCGGCTTTGAACGTATTATTATTCCACAAACCAA
TATCGGTGGTTGGGAATTCCCTGAAAATATTCAAGTGATTGGCGTATCGAATGTGAGCGAGGCGCTTGCCTGTGCATTTA
AACAACGTCAGCACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(345-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.198

99.127

0.646
  radA Streptococcus pneumoniae Rx1

59.823

98.908

0.592
  radA Streptococcus pneumoniae D39

59.823

98.908

0.592
  radA Streptococcus pneumoniae R6

59.823

98.908

0.592
  radA Streptococcus pneumoniae TIGR4

59.823

98.908

0.592
  radA Streptococcus mitis NCTC 12261

59.823

98.908

0.592
  radA Streptococcus mitis SK321

59.823

98.908

0.592

Multiple sequence alignment