Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   Q5794_RS19925 Genome accession   NZ_CP130958
Coordinates   3744186..3744560 (+) Length   124 a.a.
NCBI ID   WP_374989241.1    Uniprot ID   -
Organism   Priestia megaterium strain BS2-10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3739186..3749560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5794_RS19905 (Q5794_19870) - 3739676..3740347 (-) 672 WP_374988369.1 response regulator transcription factor -
  Q5794_RS19910 (Q5794_19875) - 3740673..3741491 (+) 819 WP_013058559.1 squalene/phytoene synthase family protein -
  Q5794_RS19915 (Q5794_19880) - 3741527..3743476 (-) 1950 WP_374988370.1 FUSC family protein -
  Q5794_RS19920 (Q5794_19885) - 3743633..3743893 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  Q5794_RS19925 (Q5794_19890) nucA/comI 3744186..3744560 (+) 375 WP_374989241.1 sporulation protein Machinery gene
  Q5794_RS19930 (Q5794_19895) comJ 3744596..3745003 (+) 408 WP_374988371.1 competence protein ComJ -
  Q5794_RS19935 (Q5794_19900) helD 3745032..3747350 (-) 2319 WP_374988372.1 RNA polymerase recycling motor HelD -
  Q5794_RS19940 (Q5794_19905) - 3747595..3747720 (-) 126 WP_016765178.1 hypothetical protein -
  Q5794_RS19945 (Q5794_19910) - 3747860..3748378 (-) 519 WP_251033890.1 enoyl-CoA hydratase/isomerase family protein -
  Q5794_RS19950 (Q5794_19915) - 3748618..3748986 (+) 369 WP_374988373.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13620.90 Da        Isoelectric Point: 4.3465

>NTDB_id=862328 Q5794_RS19925 WP_374989241.1 3744186..3744560(+) (nucA/comI) [Priestia megaterium strain BS2-10]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNLLEQHPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=862328 Q5794_RS19925 WP_374989241.1 3744186..3744560(+) (nucA/comI) [Priestia megaterium strain BS2-10]
ATGGGACATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTATGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCGGAAACGGGTGATCATATTCGTGACGCAATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGTGAAGAATCGCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCTGTTAGAACAGCATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.387

95.968

0.637