Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   Q5794_RS16735 Genome accession   NZ_CP130958
Coordinates   3201169..3202119 (-) Length   316 a.a.
NCBI ID   WP_374988172.1    Uniprot ID   -
Organism   Priestia megaterium strain BS2-10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3196169..3207119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5794_RS16705 (Q5794_16680) - 3196626..3196880 (+) 255 WP_214988324.1 hypothetical protein -
  Q5794_RS16710 (Q5794_16685) - 3196941..3197081 (-) 141 WP_013057884.1 hypothetical protein -
  Q5794_RS16715 (Q5794_16690) - 3197340..3198194 (-) 855 WP_013057886.1 manganese catalase family protein -
  Q5794_RS16720 (Q5794_16695) - 3198497..3199453 (-) 957 WP_374988171.1 siderophore ABC transporter substrate-binding protein -
  Q5794_RS16725 (Q5794_16700) - 3199477..3200235 (-) 759 WP_116738852.1 ABC transporter ATP-binding protein -
  Q5794_RS16730 (Q5794_16705) - 3200229..3201176 (-) 948 WP_214988320.1 iron chelate uptake ABC transporter family permease subunit -
  Q5794_RS16735 (Q5794_16710) ceuB 3201169..3202119 (-) 951 WP_374988172.1 ABC transporter permease Machinery gene
  Q5794_RS16740 (Q5794_16715) - 3202681..3203487 (-) 807 WP_057244398.1 cell wall hydrolase -
  Q5794_RS16745 (Q5794_16720) - 3203850..3204104 (+) 255 WP_013057893.1 hypothetical protein -
  Q5794_RS16750 (Q5794_16725) - 3204185..3204349 (-) 165 WP_192994307.1 hypothetical protein -
  Q5794_RS16755 (Q5794_16730) - 3204675..3205238 (-) 564 WP_214985931.1 NAD(P)H-dependent oxidoreductase -
  Q5794_RS16760 (Q5794_16735) lepB 3205529..3206089 (-) 561 WP_374988173.1 signal peptidase I -
  Q5794_RS16765 (Q5794_16740) - 3206173..3206529 (-) 357 WP_192994311.1 DUF4440 domain-containing protein -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 35003.30 Da        Isoelectric Point: 9.9188

>NTDB_id=862320 Q5794_RS16735 WP_374988172.1 3201169..3202119(-) (ceuB) [Priestia megaterium strain BS2-10]
MKFYQLILIFAVLSVLSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMTIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESVSINLGVKYKQIVNVGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRIIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=862320 Q5794_RS16735 WP_374988172.1 3201169..3202119(-) (ceuB) [Priestia megaterium strain BS2-10]
TTGAAGTTTTATCAGTTAATTCTTATATTTGCTGTACTATCGGTTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCAAGGCTTTTGAGCATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACTGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTAATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAC
CATTGCTTTCATTTTCTCACTTGCAGGTAATTTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACCATTT
ATATTCCACTAGTCGGTTTAATGCTTGGGAGTATTGTAAGTTCTCTAGCCACATTCATTGCCTACAAATATGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTTGTCGTTAAAGGGAGATATGAACTTTTATACCTGAGTATACC
GCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCGTTTCGATCAATTTAGGCG
TGAAATATAAACAAATCGTTAACGTTGGACTAGTTATTGTTTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTTTTAGGGTTGATTATTCCAAATATCGTATCGATTTACCGTGGAGATCATTTACGAAAAAGCCTGCCTCATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTTGCGTGCGATATTTTAGGCAGAATTATTATTTTCCCTTATGAAATTTCCATTG
GGTTAATGGTAGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.318

95.57

0.5