Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q6G12_RS24500 Genome accession   NZ_CP130900
Coordinates   5205954..5206511 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CW13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5200954..5211511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6G12_RS24480 (Q6G12_24450) pilR 5202230..5203567 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  Q6G12_RS24485 (Q6G12_24455) thiO 5203613..5204707 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  Q6G12_RS24490 (Q6G12_24460) - 5204842..5205351 (+) 510 WP_375669750.1 GspH/FimT family pseudopilin -
  Q6G12_RS24495 (Q6G12_24465) - 5205457..5205963 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  Q6G12_RS24500 (Q6G12_24470) pilV 5205954..5206511 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  Q6G12_RS24505 (Q6G12_24475) pilW 5206508..5207332 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  Q6G12_RS24510 (Q6G12_24480) pilX 5207329..5207916 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  Q6G12_RS24515 (Q6G12_24485) pilY1 5207928..5211419 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=862119 Q6G12_RS24500 WP_003119423.1 5205954..5206511(+) (pilV) [Pseudomonas aeruginosa strain CW13]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=862119 Q6G12_RS24500 WP_003119423.1 5205954..5206511(+) (pilV) [Pseudomonas aeruginosa strain CW13]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995