Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   KI212_RS00200 Genome accession   NZ_AP024589
Coordinates   38855..40480 (-) Length   541 a.a.
NCBI ID   WP_059107012.1    Uniprot ID   A0AAP8TSP8
Organism   Staphylococcus auricularis strain JCM 2421     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 38855..47097 38855..40480 within 0


Gene organization within MGE regions


Location: 38855..47097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI212_RS00200 (JCM2421_00400) ccrB 38855..40480 (-) 1626 WP_059107012.1 cassette chromosome recombinase CcrB Machinery gene
  KI212_RS00205 (JCM2421_00410) ccrA 40500..41849 (-) 1350 Protein_38 cassette chromosome recombinase CcrA -
  KI212_RS00210 (JCM2421_00420) - 42040..42315 (-) 276 WP_059107011.1 recombinase family protein -
  KI212_RS00215 (JCM2421_00430) cch1 42384..44171 (-) 1788 WP_059107010.1 cassette chromosome replicative helicase -
  KI212_RS00220 (JCM2421_00440) - 44297..45727 (-) 1431 WP_059107009.1 DUF6038 family protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62385.37 Da        Isoelectric Point: 9.6979

>NTDB_id=86209 KI212_RS00200 WP_059107012.1 38855..40480(-) (ccrB) [Staphylococcus auricularis strain JCM 2421]
MNEMKKKRIGAYIRVSTERQVEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLKDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHAPIIGKNLWDKVQARKKQVSEKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDIAALNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=86209 KI212_RS00200 WP_059107012.1 38855..40480(-) (ccrB) [Staphylococcus auricularis strain JCM 2421]
ATGAATGAAATGAAGAAGAAGAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTAGAGGGTTATAGCATAGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAATGGCTATGAACTTGTTGATATATATGCAGATCGAGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAAAGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGCATGGAAGTCAAAAATTCAACAGGTAAGTTAATGCTCCAGATACTTGCAAGTTTTTCTGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACACCGGGCAACATCAAAGAGCTTTAGAGGGCTATTATCAGGGCAATCTT
CCTTTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTACCGCAAAATTGCGAATGCACTCAATCATAAAGGTTATGTCACTAAGAAGG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATTCAATTCGCAAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGCTTGAATGATAAGCCAGTAATCGCTGAAGGTAAGCACGCCCCTATTATTGG
CAAAAACTTATGGGACAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTGCATGGTAAAGGAACCAATC
TATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGATGGT
ACCAAGAAGCGAATACGCTATTATTCTTGTAGTAATTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGTTAG
AGCTGATGTTATAGAAAAATATGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTTAATCAAGATAGTCAAATTGATATAGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGATGAA
ATAAACACTAAACTAAAAAATCTAATTCAAACGATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACTATTCA
TCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCATCTT
ATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATGACACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Resolvase, N terminal domain (Resolvase)

(11-154)

Recombinase (Recombinase)

(179-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.258

100

0.804

Multiple sequence alignment