Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | Q6380_RS03965 | Genome accession | NZ_CP130899 |
| Coordinates | 766002..767747 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain NJ195417 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 730830..805876 | 766002..767747 | within | 0 |
| IS/Tn | 768434..769435 | 766002..767747 | flank | 687 |
Gene organization within MGE regions
Location: 730830..805876
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q6380_RS03800 (Q6380_03800) | - | 730830..731900 (-) | 1071 | WP_010360162.1 | integrase arm-type DNA-binding domain-containing protein | - |
| Q6380_RS03805 (Q6380_03805) | - | 732109..732888 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| Q6380_RS03810 (Q6380_03810) | dinB | 733788..734846 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| Q6380_RS03815 (Q6380_03815) | rep | 734916..736931 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| Q6380_RS03820 (Q6380_03820) | aroD | 736951..737715 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| Q6380_RS03825 (Q6380_03825) | recA | 737915..738961 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| Q6380_RS03830 (Q6380_03830) | - | 739614..739949 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| Q6380_RS03835 (Q6380_03835) | dnaX | 740030..742153 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| Q6380_RS03840 (Q6380_03840) | mutL | 742248..744212 (-) | 1965 | WP_047926984.1 | DNA mismatch repair endonuclease MutL | - |
| Q6380_RS03845 (Q6380_03845) | - | 744356..744541 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| Q6380_RS03850 (Q6380_03850) | - | 744552..745220 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| Q6380_RS03855 (Q6380_03855) | - | 745220..745933 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| Q6380_RS03860 (Q6380_03860) | purE | 745981..746466 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| Q6380_RS03865 (Q6380_03865) | - | 746678..747488 (-) | 811 | Protein_750 | transposase | - |
| Q6380_RS03870 (Q6380_03870) | - | 747859..748224 (+) | 366 | Protein_751 | transposase | - |
| Q6380_RS03875 (Q6380_03875) | - | 748246..749250 (+) | 1005 | Protein_752 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| Q6380_RS03880 (Q6380_03880) | - | 749451..750107 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| Q6380_RS03885 (Q6380_03885) | - | 750104..751873 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| Q6380_RS03890 (Q6380_03890) | - | 752080..752694 (+) | 615 | WP_047917856.1 | molybdenum cofactor guanylyltransferase | - |
| Q6380_RS03895 (Q6380_03895) | - | 752857..753474 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| Q6380_RS03900 (Q6380_03900) | - | 753482..754345 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| Q6380_RS03905 (Q6380_03905) | - | 754358..754792 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| Q6380_RS03910 (Q6380_03910) | rpe | 754938..755621 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| Q6380_RS03915 (Q6380_03915) | ruvB | 755866..756897 (-) | 1032 | WP_143824042.1 | Holliday junction branch migration DNA helicase RuvB | - |
| Q6380_RS03920 (Q6380_03920) | - | 756979..757287 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| Q6380_RS03925 (Q6380_03925) | - | 757706..758938 (-) | 1233 | WP_003702731.1 | multifunctional CCA addition/repair protein | - |
| Q6380_RS03930 (Q6380_03930) | - | 759017..760645 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| Q6380_RS03935 (Q6380_03935) | - | 760795..761169 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| Q6380_RS03940 (Q6380_03940) | - | 761218..762756 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| Q6380_RS03945 (Q6380_03945) | recR | 762823..763440 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| Q6380_RS03950 (Q6380_03950) | - | 763496..763774 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| Q6380_RS03955 (Q6380_03955) | - | 764000..765247 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| Q6380_RS03960 (Q6380_03960) | lolD | 765240..765935 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| Q6380_RS03965 (Q6380_03965) | recD | 766002..767747 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| Q6380_RS03970 (Q6380_03970) | - | 767819..768465 (-) | 647 | Protein_771 | methyltransferase | - |
| Q6380_RS03975 (Q6380_03975) | - | 768473..769435 (+) | 963 | WP_127466217.1 | transposase | - |
| Q6380_RS03980 (Q6380_03980) | - | 769568..770023 (-) | 456 | Protein_773 | methyltransferase | - |
| Q6380_RS03985 (Q6380_03985) | lon | 770275..772737 (+) | 2463 | WP_003688644.1 | endopeptidase La | - |
| Q6380_RS03990 (Q6380_03990) | - | 772919..773188 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| Q6380_RS03995 (Q6380_03995) | - | 773364..773798 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| Q6380_RS04000 (Q6380_04000) | - | 773791..775098 (-) | 1308 | WP_103195193.1 | homoserine dehydrogenase | - |
| Q6380_RS04005 (Q6380_04005) | - | 775294..775665 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| Q6380_RS04010 (Q6380_04010) | - | 775742..777664 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| Q6380_RS04015 (Q6380_04015) | - | 777651..778046 (+) | 396 | WP_025456251.1 | hypothetical protein | - |
| Q6380_RS04020 (Q6380_04020) | - | 778137..778649 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| Q6380_RS04025 (Q6380_04025) | - | 779079..779774 (-) | 696 | WP_033910499.1 | DUF4400 domain-containing protein | - |
| Q6380_RS04030 (Q6380_04030) | traD | 779764..781806 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| Q6380_RS04035 (Q6380_04035) | mobH | 781803..784355 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| Q6380_RS04040 (Q6380_04040) | - | 784352..784771 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| Q6380_RS04045 (Q6380_04045) | - | 785282..785743 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| Q6380_RS04050 (Q6380_04050) | - | 785713..786234 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| Q6380_RS04055 (Q6380_04055) | traA | 786290..786586 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| Q6380_RS04060 (Q6380_04060) | traL | 786608..786889 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| Q6380_RS04065 (Q6380_04065) | - | 786886..787551 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| Q6380_RS04070 (Q6380_04070) | - | 787553..788287 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| Q6380_RS04075 (Q6380_04075) | - | 788289..789602 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| Q6380_RS04080 (Q6380_04080) | - | 789612..790331 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| Q6380_RS04085 (Q6380_04085) | - | 790328..790909 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| Q6380_RS04090 (Q6380_04090) | traC | 790919..793495 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| Q6380_RS04095 (Q6380_04095) | - | 793523..794071 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| Q6380_RS04100 (Q6380_04100) | - | 794071..794616 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| Q6380_RS04105 (Q6380_04105) | - | 794625..795281 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| Q6380_RS04110 (Q6380_04110) | - | 795278..796396 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| Q6380_RS04115 (Q6380_04115) | - | 796423..796596 (-) | 174 | WP_228369789.1 | hypothetical protein | - |
| Q6380_RS04120 (Q6380_04120) | trbC | 796681..797163 (+) | 483 | WP_228369788.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| Q6380_RS04125 (Q6380_04125) | - | 797160..798404 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| Q6380_RS04130 (Q6380_04130) | traN | 798428..799984 (+) | 1557 | WP_229684969.1 | conjugal transfer protein TraN | - |
| Q6380_RS04135 (Q6380_04135) | - | 799971..800396 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| Q6380_RS04140 (Q6380_04140) | - | 800408..801184 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| Q6380_RS04145 (Q6380_04145) | - | 801356..802867 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| Q6380_RS04150 (Q6380_04150) | - | 802874..805876 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=862070 Q6380_RS03965 WP_003688652.1 766002..767747(+) (recD) [Neisseria gonorrhoeae strain NJ195417]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=862070 Q6380_RS03965 WP_003688652.1 766002..767747(+) (recD) [Neisseria gonorrhoeae strain NJ195417]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |