Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | Q6381_RS03965 | Genome accession | NZ_CP130898 |
| Coordinates | 767071..768816 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain NJ196610 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 731899..806945 | 767071..768816 | within | 0 |
| IS/Tn | 769503..770504 | 767071..768816 | flank | 687 |
Gene organization within MGE regions
Location: 731899..806945
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q6381_RS03795 (Q6381_03795) | - | 731899..732969 (-) | 1071 | WP_010360162.1 | integrase arm-type DNA-binding domain-containing protein | - |
| Q6381_RS03800 (Q6381_03800) | - | 733178..733957 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| Q6381_RS03805 (Q6381_03805) | - | 734549..734758 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| Q6381_RS03810 (Q6381_03810) | dinB | 734857..735915 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| Q6381_RS03815 (Q6381_03815) | rep | 735985..738000 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| Q6381_RS03820 (Q6381_03820) | aroD | 738020..738784 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| Q6381_RS03825 (Q6381_03825) | recA | 738984..740030 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| Q6381_RS03830 (Q6381_03830) | - | 740683..741018 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| Q6381_RS03835 (Q6381_03835) | dnaX | 741099..743222 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| Q6381_RS03840 (Q6381_03840) | mutL | 743317..745281 (-) | 1965 | WP_047926984.1 | DNA mismatch repair endonuclease MutL | - |
| Q6381_RS03845 (Q6381_03845) | - | 745425..745610 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| Q6381_RS03850 (Q6381_03850) | - | 745621..746289 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| Q6381_RS03855 (Q6381_03855) | - | 746289..747002 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| Q6381_RS03860 (Q6381_03860) | purE | 747050..747535 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| Q6381_RS03865 (Q6381_03865) | - | 747747..748557 (-) | 811 | Protein_750 | transposase | - |
| Q6381_RS03870 (Q6381_03870) | - | 748928..749293 (+) | 366 | Protein_751 | transposase | - |
| Q6381_RS03875 (Q6381_03875) | - | 749315..750319 (+) | 1005 | Protein_752 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| Q6381_RS03880 (Q6381_03880) | - | 750520..751176 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| Q6381_RS03885 (Q6381_03885) | - | 751173..752942 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| Q6381_RS03890 (Q6381_03890) | - | 753149..753763 (+) | 615 | WP_047917856.1 | molybdenum cofactor guanylyltransferase | - |
| Q6381_RS03895 (Q6381_03895) | - | 753926..754543 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| Q6381_RS03900 (Q6381_03900) | - | 754551..755414 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| Q6381_RS03905 (Q6381_03905) | - | 755427..755861 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| Q6381_RS03910 (Q6381_03910) | rpe | 756007..756690 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| Q6381_RS03915 (Q6381_03915) | ruvB | 756935..757966 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| Q6381_RS03920 (Q6381_03920) | - | 758048..758356 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| Q6381_RS03925 (Q6381_03925) | - | 758775..760007 (-) | 1233 | WP_003702731.1 | multifunctional CCA addition/repair protein | - |
| Q6381_RS03930 (Q6381_03930) | - | 760086..761714 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| Q6381_RS03935 (Q6381_03935) | - | 761864..762238 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| Q6381_RS03940 (Q6381_03940) | - | 762287..763825 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| Q6381_RS03945 (Q6381_03945) | recR | 763892..764509 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| Q6381_RS03950 (Q6381_03950) | - | 764565..764843 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| Q6381_RS03955 (Q6381_03955) | - | 765069..766316 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| Q6381_RS03960 (Q6381_03960) | lolD | 766309..767004 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| Q6381_RS03965 (Q6381_03965) | recD | 767071..768816 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| Q6381_RS03970 (Q6381_03970) | - | 768888..769534 (-) | 647 | Protein_771 | methyltransferase | - |
| Q6381_RS03975 (Q6381_03975) | - | 769542..770504 (+) | 963 | WP_127466217.1 | transposase | - |
| Q6381_RS03980 (Q6381_03980) | - | 770637..771092 (-) | 456 | Protein_773 | methyltransferase | - |
| Q6381_RS03985 (Q6381_03985) | lon | 771344..773806 (+) | 2463 | WP_003688644.1 | endopeptidase La | - |
| Q6381_RS03990 (Q6381_03990) | - | 773988..774257 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| Q6381_RS03995 (Q6381_03995) | - | 774433..774867 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| Q6381_RS04000 (Q6381_04000) | - | 774860..776167 (-) | 1308 | WP_103195193.1 | homoserine dehydrogenase | - |
| Q6381_RS04005 (Q6381_04005) | - | 776363..776734 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| Q6381_RS04010 (Q6381_04010) | - | 776811..778733 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| Q6381_RS04015 (Q6381_04015) | - | 778720..779115 (+) | 396 | WP_025456251.1 | hypothetical protein | - |
| Q6381_RS04020 (Q6381_04020) | - | 779206..779718 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| Q6381_RS04025 (Q6381_04025) | - | 780148..780843 (-) | 696 | WP_033910499.1 | DUF4400 domain-containing protein | - |
| Q6381_RS04030 (Q6381_04030) | traD | 780833..782875 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| Q6381_RS04035 (Q6381_04035) | mobH | 782872..785424 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| Q6381_RS04040 (Q6381_04040) | - | 785421..785840 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| Q6381_RS04045 (Q6381_04045) | - | 786351..786812 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| Q6381_RS04050 (Q6381_04050) | - | 786782..787303 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| Q6381_RS04055 (Q6381_04055) | traA | 787359..787655 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| Q6381_RS04060 (Q6381_04060) | traL | 787677..787958 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| Q6381_RS04065 (Q6381_04065) | - | 787955..788620 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| Q6381_RS04070 (Q6381_04070) | - | 788622..789356 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| Q6381_RS04075 (Q6381_04075) | - | 789358..790671 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| Q6381_RS04080 (Q6381_04080) | - | 790681..791400 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| Q6381_RS04085 (Q6381_04085) | - | 791397..791978 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| Q6381_RS04090 (Q6381_04090) | traC | 791988..794564 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| Q6381_RS04095 (Q6381_04095) | - | 794592..795140 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| Q6381_RS04100 (Q6381_04100) | - | 795140..795685 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| Q6381_RS04105 (Q6381_04105) | - | 795694..796350 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| Q6381_RS04110 (Q6381_04110) | - | 796347..797465 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| Q6381_RS04115 (Q6381_04115) | trbC | 797480..798232 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| Q6381_RS04120 (Q6381_04120) | - | 798229..799473 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| Q6381_RS04125 (Q6381_04125) | traN | 799512..801053 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| Q6381_RS04130 (Q6381_04130) | - | 801040..801465 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| Q6381_RS04135 (Q6381_04135) | - | 801477..802253 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| Q6381_RS04140 (Q6381_04140) | - | 802425..803936 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| Q6381_RS04145 (Q6381_04145) | - | 803943..806945 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=862022 Q6381_RS03965 WP_003688652.1 767071..768816(+) (recD) [Neisseria gonorrhoeae strain NJ196610]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=862022 Q6381_RS03965 WP_003688652.1 767071..768816(+) (recD) [Neisseria gonorrhoeae strain NJ196610]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |