Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q6387_RS07945 Genome accession   NZ_CP130897
Coordinates   1525301..1526050 (-) Length   249 a.a.
NCBI ID   WP_369524583.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ197542     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1520301..1531050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6387_RS07915 (Q6387_07915) - 1520902..1522130 (-) 1229 Protein_1533 multidrug effflux MFS transporter -
  Q6387_RS07920 (Q6387_07920) - 1522246..1523121 (-) 876 WP_003689397.1 DMT family transporter -
  Q6387_RS07925 (Q6387_07925) - 1523304..1523699 (+) 396 Protein_1535 pilin -
  Q6387_RS07935 (Q6387_07935) - 1524284..1525036 (+) 753 Protein_1536 opacity family porin -
  Q6387_RS07940 (Q6387_07940) - 1525010..1525168 (-) 159 WP_154212467.1 hypothetical protein -
  Q6387_RS07945 (Q6387_07945) pilA 1525301..1526050 (-) 750 WP_369524583.1 nitrilase-related carbon-nitrogen hydrolase Machinery gene
  Q6387_RS07950 (Q6387_07950) - 1526033..1526905 (+) 873 WP_003693577.1 prephenate dehydrogenase -
  Q6387_RS07955 (Q6387_07955) - 1526963..1528117 (-) 1155 WP_010358927.1 NnrS family protein -
  Q6387_RS07960 (Q6387_07960) - 1528162..1528530 (-) 369 WP_003689404.1 hemerythrin domain-containing protein -
  Q6387_RS07965 (Q6387_07965) - 1528704..1529147 (+) 444 WP_003689406.1 Rrf2 family transcriptional regulator -
  Q6387_RS07970 (Q6387_07970) - 1529157..1529285 (+) 129 WP_010358932.1 hypothetical protein -
  Q6387_RS07975 (Q6387_07975) - 1529309..1529929 (-) 621 WP_010358934.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26573.84 Da        Isoelectric Point: 7.8774

>NTDB_id=861982 Q6387_RS07945 WP_369524583.1 1525301..1526050(-) (pilA) [Neisseria gonorrhoeae strain NJ197542]
MVQNGHLCKRFSQSAAMVAYRRNMPQGRQEKGEEMDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGADWVLLPEYWV
LMGANDTGKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQ
KAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA
RAFVDALLD

Nucleotide


Download         Length: 750 bp        

>NTDB_id=861982 Q6387_RS07945 WP_369524583.1 1525301..1526050(-) (pilA) [Neisseria gonorrhoeae strain NJ197542]
ATGGTTCAAAATGGGCATTTGTGTAAACGGTTTTCGCAAAGTGCCGCCATGGTAGCCTATCGGCGGAATATGCCGCAAGG
TCGGCAGGAAAAAGGAGAAGAAATGGACAAAATCAGAGTTGCCGCCGTGCAGATGGTGTCGGGCGTGTCGCCGGAAACCA
ACGTCGCCGCCATGAAACGCCTGGTCGCACGGGCGGCGGAGCAGGGTGCGGATTGGGTGCTGCTGCCCGAATATTGGGTG
CTGATGGGCGCAAACGATACCGGCAAACTCGCACTTGCCGAGCCTTTGGGCGGCGGACGCTTTCAGACGGCATTGAGCGA
AACGGCGAAAGAATGCGGCGTGGTGCTGTTCGGCGGAACCGTGCCGCTGCAAAGCCCCAAAGCGCGCGGGATCGACATCG
TGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAA
AAAGCCATTCCCGGCGCGCCGCACGAAATCATCGTCGTACTCGATGCCAATATCGGGCAAAACGCCGTCAACCAAGTCAA
AGCCTTTGACGACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCG
CGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATAGACGACCTGCGCCCGTTTGACGCG
CGCGCGTTTGTGGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

Carbon-nitrogen hydrolase (CN_hydrolase)

(39-166)

SRP54-type protein, GTPase domain (SRP54)

(124-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

80.347

69.478

0.558