Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | Q6387_RS03985 | Genome accession | NZ_CP130897 |
| Coordinates | 767081..768826 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain NJ197542 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 731909..806956 | 767081..768826 | within | 0 |
| IS/Tn | 769513..770514 | 767081..768826 | flank | 687 |
Gene organization within MGE regions
Location: 731909..806956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q6387_RS03815 (Q6387_03815) | - | 731909..732979 (-) | 1071 | WP_010360162.1 | integrase arm-type DNA-binding domain-containing protein | - |
| Q6387_RS03820 (Q6387_03820) | - | 733188..733967 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| Q6387_RS03825 (Q6387_03825) | - | 734559..734768 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| Q6387_RS03830 (Q6387_03830) | dinB | 734867..735925 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| Q6387_RS03835 (Q6387_03835) | rep | 735995..738010 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| Q6387_RS03840 (Q6387_03840) | aroD | 738030..738794 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| Q6387_RS03845 (Q6387_03845) | recA | 738994..740040 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| Q6387_RS03850 (Q6387_03850) | - | 740693..741028 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| Q6387_RS03855 (Q6387_03855) | dnaX | 741109..743232 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| Q6387_RS03860 (Q6387_03860) | mutL | 743327..745291 (-) | 1965 | WP_047926984.1 | DNA mismatch repair endonuclease MutL | - |
| Q6387_RS03865 (Q6387_03865) | - | 745435..745620 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| Q6387_RS03870 (Q6387_03870) | - | 745631..746299 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| Q6387_RS03875 (Q6387_03875) | - | 746299..747012 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| Q6387_RS03880 (Q6387_03880) | purE | 747060..747545 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| Q6387_RS03885 (Q6387_03885) | - | 747757..748567 (-) | 811 | Protein_754 | transposase | - |
| Q6387_RS03890 (Q6387_03890) | - | 748938..749303 (+) | 366 | Protein_755 | transposase | - |
| Q6387_RS03895 (Q6387_03895) | - | 749325..750329 (+) | 1005 | Protein_756 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| Q6387_RS03900 (Q6387_03900) | - | 750530..751186 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| Q6387_RS03905 (Q6387_03905) | - | 751183..752952 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| Q6387_RS03910 (Q6387_03910) | - | 753159..753773 (+) | 615 | WP_047917856.1 | molybdenum cofactor guanylyltransferase | - |
| Q6387_RS03915 (Q6387_03915) | - | 753936..754553 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| Q6387_RS03920 (Q6387_03920) | - | 754561..755424 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| Q6387_RS03925 (Q6387_03925) | - | 755437..755871 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| Q6387_RS03930 (Q6387_03930) | rpe | 756017..756700 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| Q6387_RS03935 (Q6387_03935) | ruvB | 756945..757976 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| Q6387_RS03940 (Q6387_03940) | - | 758058..758366 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| Q6387_RS03945 (Q6387_03945) | - | 758785..760017 (-) | 1233 | WP_003702731.1 | multifunctional CCA addition/repair protein | - |
| Q6387_RS03950 (Q6387_03950) | - | 760096..761724 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| Q6387_RS03955 (Q6387_03955) | - | 761874..762248 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| Q6387_RS03960 (Q6387_03960) | - | 762297..763835 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| Q6387_RS03965 (Q6387_03965) | recR | 763902..764519 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| Q6387_RS03970 (Q6387_03970) | - | 764575..764853 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| Q6387_RS03975 (Q6387_03975) | - | 765079..766326 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| Q6387_RS03980 (Q6387_03980) | lolD | 766319..767014 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| Q6387_RS03985 (Q6387_03985) | recD | 767081..768826 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| Q6387_RS03990 (Q6387_03990) | - | 768898..769544 (-) | 647 | Protein_775 | methyltransferase | - |
| Q6387_RS03995 (Q6387_03995) | - | 769552..770514 (+) | 963 | WP_127466217.1 | transposase | - |
| Q6387_RS04000 (Q6387_04000) | - | 770647..771102 (-) | 456 | Protein_777 | methyltransferase | - |
| Q6387_RS04005 (Q6387_04005) | lon | 771354..773816 (+) | 2463 | WP_003688644.1 | endopeptidase La | - |
| Q6387_RS04010 (Q6387_04010) | - | 773998..774267 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| Q6387_RS04015 (Q6387_04015) | - | 774443..774877 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| Q6387_RS04020 (Q6387_04020) | - | 774870..776177 (-) | 1308 | WP_003688637.1 | homoserine dehydrogenase | - |
| Q6387_RS04025 (Q6387_04025) | - | 776373..776744 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| Q6387_RS04030 (Q6387_04030) | - | 776821..778743 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| Q6387_RS04035 (Q6387_04035) | - | 778730..779125 (+) | 396 | WP_025456251.1 | hypothetical protein | - |
| Q6387_RS04040 (Q6387_04040) | - | 779216..779728 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| Q6387_RS04045 (Q6387_04045) | - | 780158..780853 (-) | 696 | WP_041421278.1 | DUF4400 domain-containing protein | - |
| Q6387_RS04050 (Q6387_04050) | traD | 780843..782219 (-) | 1377 | WP_317629747.1 | conjugative transfer system coupling protein TraD | - |
| Q6387_RS04055 (Q6387_04055) | - | 782242..782886 (-) | 645 | WP_257242647.1 | type IV secretion-system coupling DNA-binding domain protein | - |
| Q6387_RS04060 (Q6387_04060) | mobH | 782883..785435 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| Q6387_RS04065 (Q6387_04065) | - | 785432..785851 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| Q6387_RS04070 (Q6387_04070) | - | 786362..786823 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| Q6387_RS04075 (Q6387_04075) | - | 786793..787314 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| Q6387_RS04080 (Q6387_04080) | traA | 787370..787666 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| Q6387_RS04085 (Q6387_04085) | traL | 787688..787969 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| Q6387_RS04090 (Q6387_04090) | - | 787966..788631 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| Q6387_RS04095 (Q6387_04095) | - | 788633..789367 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| Q6387_RS04100 (Q6387_04100) | - | 789369..790682 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| Q6387_RS04105 (Q6387_04105) | - | 790692..791411 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| Q6387_RS04110 (Q6387_04110) | - | 791408..791989 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| Q6387_RS04115 (Q6387_04115) | traC | 791999..794575 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| Q6387_RS04120 (Q6387_04120) | - | 794603..795151 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| Q6387_RS04125 (Q6387_04125) | - | 795151..795696 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| Q6387_RS04130 (Q6387_04130) | - | 795705..796361 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| Q6387_RS04135 (Q6387_04135) | - | 796358..797476 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| Q6387_RS04140 (Q6387_04140) | - | 797503..797676 (-) | 174 | WP_228369789.1 | hypothetical protein | - |
| Q6387_RS04145 (Q6387_04145) | trbC | 797761..798243 (+) | 483 | WP_228369788.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| Q6387_RS04150 (Q6387_04150) | - | 798240..799484 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| Q6387_RS04155 (Q6387_04155) | traN | 799523..801064 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| Q6387_RS04160 (Q6387_04160) | - | 801051..801476 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| Q6387_RS04165 (Q6387_04165) | - | 801488..802264 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| Q6387_RS04170 (Q6387_04170) | - | 802436..803947 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| Q6387_RS04175 (Q6387_04175) | - | 803954..806956 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=861975 Q6387_RS03985 WP_003688652.1 767081..768826(+) (recD) [Neisseria gonorrhoeae strain NJ197542]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=861975 Q6387_RS03985 WP_003688652.1 767081..768826(+) (recD) [Neisseria gonorrhoeae strain NJ197542]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |