Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q6383_RS02345 Genome accession   NZ_CP130896
Coordinates   450302..450913 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1911400     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445302..455913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6383_RS02320 (Q6383_02320) - 445732..446313 (-) 582 WP_047923823.1 superoxide dismutase -
  Q6383_RS02325 (Q6383_02325) dnaB 446477..447883 (+) 1407 WP_047917169.1 replicative DNA helicase -
  Q6383_RS02330 (Q6383_02330) pilH 448038..448703 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6383_RS02335 (Q6383_02335) pilV 448735..449346 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6383_RS02340 (Q6383_02340) pilJ 449343..450323 (+) 981 WP_304666344.1 PilW family protein Machinery gene
  Q6383_RS02345 (Q6383_02345) pilK 450302..450913 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6383_RS02350 (Q6383_02350) pilL 450915..451388 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  Q6383_RS02355 (Q6383_02355) - 451458..451766 (-) 309 WP_010951048.1 AzlD family protein -
  Q6383_RS02360 (Q6383_02360) - 451763..452470 (-) 708 Protein_460 AzlC family ABC transporter permease -
  Q6383_RS02365 (Q6383_02365) dut 452636..453088 (+) 453 WP_103195211.1 dUTP diphosphatase -
  Q6383_RS02370 (Q6383_02370) dapC 453166..454353 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  Q6383_RS02375 (Q6383_02375) yaaA 454664..455443 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=861922 Q6383_RS02345 WP_003687918.1 450302..450913(+) (pilK) [Neisseria gonorrhoeae strain NJ1911400]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=861922 Q6383_RS02345 WP_003687918.1 450302..450913(+) (pilK) [Neisseria gonorrhoeae strain NJ1911400]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1