Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   Q6383_RS02340 Genome accession   NZ_CP130896
Coordinates   449343..450323 (+) Length   326 a.a.
NCBI ID   WP_304666344.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1911400     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 444343..455323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6383_RS02315 (Q6383_02315) - 444991..445500 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6383_RS02320 (Q6383_02320) - 445732..446313 (-) 582 WP_047923823.1 superoxide dismutase -
  Q6383_RS02325 (Q6383_02325) dnaB 446477..447883 (+) 1407 WP_047917169.1 replicative DNA helicase -
  Q6383_RS02330 (Q6383_02330) pilH 448038..448703 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6383_RS02335 (Q6383_02335) pilV 448735..449346 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6383_RS02340 (Q6383_02340) pilJ 449343..450323 (+) 981 WP_304666344.1 PilW family protein Machinery gene
  Q6383_RS02345 (Q6383_02345) pilK 450302..450913 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6383_RS02350 (Q6383_02350) pilL 450915..451388 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  Q6383_RS02355 (Q6383_02355) - 451458..451766 (-) 309 WP_010951048.1 AzlD family protein -
  Q6383_RS02360 (Q6383_02360) - 451763..452470 (-) 708 Protein_460 AzlC family ABC transporter permease -
  Q6383_RS02365 (Q6383_02365) dut 452636..453088 (+) 453 WP_103195211.1 dUTP diphosphatase -
  Q6383_RS02370 (Q6383_02370) dapC 453166..454353 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -

Sequence


Protein


Download         Length: 326 a.a.        Molecular weight: 35933.11 Da        Isoelectric Point: 9.8167

>NTDB_id=861921 Q6383_RS02340 WP_304666344.1 449343..450323(+) (pilJ) [Neisseria gonorrhoeae strain NJ1911400]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIKGDIVDSSNQTQSNLAKPGAKQENPLFSLKRSSMDKQLIPVAESIDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRFGNNEESLFRFQLDDKGKWGNPQLLV
KKVKRMDVRYIYVSGCPEDEDAGKEEKFRYTNKFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=861921 Q6383_RS02340 WP_304666344.1 449343..450323(+) (pilJ) [Neisseria gonorrhoeae strain NJ1911400]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATATTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCAGCATGGATAAACAACTGATTCCCGTTGCTGAATCCATAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGTTTGGCAATAATGAGGAAAGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTG
AAAAAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAA
ATTCAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCC
TTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

76.596

100

0.773