Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q6388_RS11025 Genome accession   NZ_CP130895
Coordinates   2094522..2095775 (+) Length   417 a.a.
NCBI ID   WP_047920694.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2089522..2100775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS11005 (Q6388_11005) - 2090273..2091274 (+) 1002 WP_103195218.1 thiamine ABC transporter substrate-binding protein -
  Q6388_RS11010 (Q6388_11010) - 2091368..2092216 (+) 849 WP_003687000.1 mechanosensitive ion channel family protein -
  Q6388_RS11015 (Q6388_11015) - 2092242..2092724 (+) 483 WP_003694396.1 CinA family protein -
  Q6388_RS11020 (Q6388_11020) msrAB 2092808..2094376 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  Q6388_RS11025 (Q6388_11025) pilA 2094522..2095775 (+) 1254 WP_047920694.1 signal recognition particle-docking protein FtsY Machinery gene
  Q6388_RS11030 (Q6388_11030) - 2095891..2096031 (-) 141 WP_304672982.1 hypothetical protein -
  Q6388_RS11035 (Q6388_11035) - 2096045..2096857 (-) 813 WP_304673010.1 opacity family porin -
  Q6388_RS11040 (Q6388_11040) - 2097270..2097778 (-) 509 Protein_2125 pilin -
  Q6388_RS11045 (Q6388_11045) - 2098594..2098712 (-) 119 Protein_2126 pilin -
  Q6388_RS11050 (Q6388_11050) - 2098835..2099155 (-) 321 Protein_2127 pilin -
  Q6388_RS11055 (Q6388_11055) - 2099216..2099599 (-) 384 Protein_2128 pilin -
  Q6388_RS11060 (Q6388_11060) lpxC 2099744..2100667 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44317.68 Da        Isoelectric Point: 4.8618

>NTDB_id=861903 Q6388_RS11025 WP_047920694.1 2094522..2095775(+) (pilA) [Neisseria gonorrhoeae strain NJ1913940]
MFSFFRRKKKQETPALEEAQVQETAAKVESEVAQIVGNIKEDVESLAESVKGRAESAVETVSGAVEQVKETVAEMPSEAG
EAAERVESAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLIT
GDMGMDATEYLMKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKY
FQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEI
KKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGI
DDLRPFDARAFVDALLD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=861903 Q6388_RS11025 WP_047920694.1 2094522..2095775(+) (pilA) [Neisseria gonorrhoeae strain NJ1913940]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACGCCGGCTCTCGAGGAGGCCCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAATAGTTGGAAATATTAAAGAAGATGTCGAATCTTTAGCAGAAAGCGTCAAAGGGCGGG
CCGAATCTGCCGTTGAAACCGTCAGCGGTGCGGTTGAACAGGTAAAGGAAACCGTTGCCGAGATGCCGTCTGAAGCAGGG
GAAGCGGCGGAACGCGTTGAATCCGCAAAAGAAGCTGTTGCCGAAACCGTCGGCGAGGCTGTCGGGCAAGTTCAAGAAGC
CGTTGCGACAACTGAAGAACACAAGCTCGGTTGGGCTGCGCGTTTGAAACAAGGCTTGGCCAAATCACGCGACAAAATGG
CGAAATCGCTGGCCGGCGTGTTCGGCGGCGGACAAATCGGCGAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACC
GGCGATATGGGCATGGATGCCACCGAATACCTGATGAAAGACGTGCGCGGCCGCGTCAGCCTCAAAGGGCTGAAAGACGG
CAACGAATTGCGCGGCGCGTTGAAAGAAGCCTTGTACGACCTGATTAAGCCGTTGGAAAAACCGCTGGTCTTGCCCGAAA
CTAAAGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGCGCGGGCAAAACCACGTCTATCGGCAAACTCGCCAAATAT
TTCCAAGCGCAGGGCAAATCCGTATTGCTGGCGGCGGGCGATACCTTCCGCGCCGCCGCCCGTGAGCAGCTTCAGGCTTG
GGGCGGGCGCAACAATGTAACCGTCATTTCACAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCG
CCAAAGCGCGCGGGATCGACATCGTGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATC
AAAAAAGTGAAGCGCGTGCTGCAAAAAGCCATTCCCGGCGCGCCGCACGAAATCATCGTCGTACTCGATGCCAATATCGG
GCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCA
CGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATA
GACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(217-416)

SRP54-type protein, helical bundle domain (SRP54_N)

(132-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

99.76

100

0.998