Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q6388_RS07895 Genome accession   NZ_CP130895
Coordinates   1522604..1523353 (-) Length   249 a.a.
NCBI ID   WP_306307845.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517604..1528353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS07870 (Q6388_07870) - 1518159..1519387 (-) 1229 Protein_1526 multidrug effflux MFS transporter -
  Q6388_RS07875 (Q6388_07875) - 1519503..1520378 (-) 876 WP_003689397.1 DMT family transporter -
  Q6388_RS07880 (Q6388_07880) - 1520561..1520965 (+) 405 Protein_1528 pilin -
  Q6388_RS07885 (Q6388_07885) - 1521501..1522334 (+) 834 WP_304673009.1 opacity family porin -
  Q6388_RS07890 (Q6388_07890) - 1522348..1522488 (+) 141 WP_304672982.1 hypothetical protein -
  Q6388_RS07895 (Q6388_07895) pilA 1522604..1523353 (-) 750 WP_306307845.1 nitrilase-related carbon-nitrogen hydrolase Machinery gene
  Q6388_RS07900 (Q6388_07900) - 1523336..1524208 (+) 873 WP_003693577.1 prephenate dehydrogenase -
  Q6388_RS07905 (Q6388_07905) - 1524266..1525420 (-) 1155 WP_010358927.1 NnrS family protein -
  Q6388_RS07910 (Q6388_07910) - 1525465..1525833 (-) 369 WP_003689404.1 hemerythrin domain-containing protein -
  Q6388_RS07915 (Q6388_07915) - 1526007..1526450 (+) 444 WP_003689406.1 Rrf2 family transcriptional regulator -
  Q6388_RS07920 (Q6388_07920) - 1526460..1526588 (+) 129 WP_010358932.1 hypothetical protein -
  Q6388_RS07925 (Q6388_07925) - 1526612..1527232 (-) 621 WP_010358934.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26574.78 Da        Isoelectric Point: 6.7235

>NTDB_id=861888 Q6388_RS07895 WP_306307845.1 1522604..1523353(-) (pilA) [Neisseria gonorrhoeae strain NJ1913940]
MVQNGHLCKRFSQSAAMVAYRRNMPQGRQEKGEEMDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGADWVLLPEYWV
LMGANDTGKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQ
KAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA
RAFVDALLD

Nucleotide


Download         Length: 750 bp        

>NTDB_id=861888 Q6388_RS07895 WP_306307845.1 1522604..1523353(-) (pilA) [Neisseria gonorrhoeae strain NJ1913940]
ATGGTTCAAAATGGGCATTTGTGTAAACGGTTTTCGCAAAGTGCCGCCATGGTAGCCTATCGGCGGAATATGCCGCAAGG
TCGGCAGGAAAAAGGAGAAGAAATGGACAAAATCAGAGTTGCCGCCGTGCAGATGGTGTCGGGCGTGTCGCCGGAAACCA
ACGTCGCCGCCATGAAACGCCTGGTCGCACGGGCGGCGGAGCAGGGTGCGGATTGGGTGCTGCTGCCCGAATATTGGGTG
CTGATGGGCGCAAACGATACCGGCAAACTCGCACTTGCCGAGCCTTTGGGCGGCGGACGCTTTCAGACGGCATTGAGCGA
AACGGCGAAAGAATGCGGCGTGGTGCTGTTCGGCGGAACCGTGCCGCTGCAAAGCCCCGAAGCGCGCGGGATCGACATCG
TGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAA
AAAGCCATTCCCGGCGCGCCGCACGAAATCATCGTCGTACTCGATGCCAATATCGGGCAAAACGCCGTCAACCAAGTCAA
AGCCTTTGACGACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCG
CGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATAGACGACCTGCGCCCGTTTGACGCG
CGCGCGTTTGTGGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(124-248)

Carbon-nitrogen hydrolase (CN_hydrolase)

(39-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

79.769

69.478

0.554