Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q6382_RS11210 Genome accession   NZ_CP130894
Coordinates   2136951..2137562 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1914215     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2131951..2142562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6382_RS11185 (Q6382_11185) - 2132382..2132962 (-) 581 Protein_2152 superoxide dismutase -
  Q6382_RS11190 (Q6382_11190) dnaB 2133126..2134532 (+) 1407 WP_003690896.1 replicative DNA helicase -
  Q6382_RS11195 (Q6382_11195) pilH 2134687..2135352 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6382_RS11200 (Q6382_11200) pilV 2135384..2135995 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6382_RS11205 (Q6382_11205) pilJ 2135992..2136972 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  Q6382_RS11210 (Q6382_11210) pilK 2136951..2137562 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6382_RS11215 (Q6382_11215) pilL 2137564..2138040 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6382_RS11220 (Q6382_11220) - 2138110..2138418 (-) 309 WP_010951048.1 AzlD family protein -
  Q6382_RS11225 (Q6382_11225) - 2138415..2139122 (-) 708 Protein_2160 AzlC family ABC transporter permease -
  Q6382_RS11230 (Q6382_11230) dut 2139288..2139740 (+) 453 WP_103195211.1 dUTP diphosphatase -
  Q6382_RS11235 (Q6382_11235) dapC 2139818..2141005 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  Q6382_RS11240 (Q6382_11240) yaaA 2141316..2142095 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=861857 Q6382_RS11210 WP_003687918.1 2136951..2137562(+) (pilK) [Neisseria gonorrhoeae strain NJ1914215]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=861857 Q6382_RS11210 WP_003687918.1 2136951..2137562(+) (pilK) [Neisseria gonorrhoeae strain NJ1914215]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1