Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q6382_RS09360 Genome accession   NZ_CP130894
Coordinates   1793895..1794494 (-) Length   199 a.a.
NCBI ID   WP_047926976.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1914215     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788895..1799494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6382_RS09345 (Q6382_09345) pilQ 1790470..1792665 (-) 2196 WP_047918359.1 type IV pilus secretin PilQ Machinery gene
  Q6382_RS09350 (Q6382_09350) pilP 1792684..1793229 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  Q6382_RS09355 (Q6382_09355) - 1793247..1793894 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  Q6382_RS09360 (Q6382_09360) pilN 1793895..1794494 (-) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  Q6382_RS09365 (Q6382_09365) pilM 1794497..1795612 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  Q6382_RS09370 (Q6382_09370) - 1795764..1798160 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  Q6382_RS09375 (Q6382_09375) yihA 1798281..1798910 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22283.64 Da        Isoelectric Point: 9.7317

>NTDB_id=861845 Q6382_RS09360 WP_047926976.1 1793895..1794494(-) (pilN) [Neisseria gonorrhoeae strain NJ1914215]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGVVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=861845 Q6382_RS09360 WP_047926976.1 1793895..1794494(-) (pilN) [Neisseria gonorrhoeae strain NJ1914215]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGTCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975