Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q6386_RS02330 Genome accession   NZ_CP130891
Coordinates   425338..425916 (+) Length   192 a.a.
NCBI ID   WP_232017972.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420338..430916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS02300 (Q6386_02300) - 421288..421908 (+) 621 WP_010358934.1 L-threonylcarbamoyladenylate synthase -
  Q6386_RS02305 (Q6386_02305) - 421932..422060 (-) 129 WP_010358932.1 hypothetical protein -
  Q6386_RS02310 (Q6386_02310) - 422070..422513 (-) 444 WP_003689406.1 Rrf2 family transcriptional regulator -
  Q6386_RS02315 (Q6386_02315) - 422687..423055 (+) 369 WP_003689404.1 hemerythrin domain-containing protein -
  Q6386_RS02320 (Q6386_02320) - 423100..424254 (+) 1155 WP_010358927.1 NnrS family protein -
  Q6386_RS02325 (Q6386_02325) - 424312..425184 (-) 873 WP_003693577.1 prephenate dehydrogenase -
  Q6386_RS02330 (Q6386_02330) pilA 425338..425916 (+) 579 WP_232017972.1 nitrilase-related carbon-nitrogen hydrolase Machinery gene
  Q6386_RS02335 (Q6386_02335) - 426185..426940 (-) 756 Protein_438 opacity family porin -
  Q6386_RS02340 (Q6386_02340) - 427362..427763 (-) 402 Protein_439 pilin -
  Q6386_RS02345 (Q6386_02345) - 427946..428821 (+) 876 WP_003689397.1 DMT family transporter -
  Q6386_RS02350 (Q6386_02350) - 428937..430165 (+) 1229 Protein_441 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20298.55 Da        Isoelectric Point: 5.0264

>NTDB_id=861683 Q6386_RS02330 WP_232017972.1 425338..425916(+) (pilA) [Neisseria gonorrhoeae strain NJ208430]
MKRLVARAAEQGADWVLLPEYWVLMGANDTGKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEARGIDIVLAD
TAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALAS
DRPVPVRYIGVGEGIDDLRPFDARAFVDALLD

Nucleotide


Download         Length: 579 bp        

>NTDB_id=861683 Q6386_RS02330 WP_232017972.1 425338..425916(+) (pilA) [Neisseria gonorrhoeae strain NJ208430]
ATGAAACGCCTGGTCGCACGGGCGGCGGAGCAGGGTGCGGATTGGGTGCTGCTGCCCGAATATTGGGTGCTGATGGGCGC
AAACGATACCGGCAAACTCGCACTTGCCGAGCCTTTGGGCGGCGGACGCTTTCAGACGGCATTGAGCGAAACGGCGAAAG
AATGCGGCGTGGTGCTGTTCGGCGGAACCGTGCCGCTGCAAAGCCCCGAAGCGCGCGGGATCGACATCGTGCTTGCCGAC
ACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAAAAAGCCATTCC
CGGCGCGCCGCACGAAATCATCGTCGTACTCGATGCCAATATCGGGCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACG
ACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCC
GACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATAGACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGT
GGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

Carbon-nitrogen hydrolase (CN_hydrolase)

(2-102)

SRP54-type protein, GTPase domain (SRP54)

(67-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

79.769

90.104

0.719