Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q6384_RS06865 Genome accession   NZ_CP130890
Coordinates   1277039..1277686 (+) Length   215 a.a.
NCBI ID   WP_103195281.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208756     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1272039..1282686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6384_RS06835 (Q6384_06835) - 1273058..1273678 (+) 621 WP_010358934.1 L-threonylcarbamoyladenylate synthase -
  Q6384_RS06840 (Q6384_06840) - 1273702..1273830 (-) 129 WP_010358932.1 hypothetical protein -
  Q6384_RS06845 (Q6384_06845) - 1273840..1274283 (-) 444 WP_003689406.1 Rrf2 family transcriptional regulator -
  Q6384_RS06850 (Q6384_06850) - 1274457..1274825 (+) 369 WP_003689404.1 hemerythrin domain-containing protein -
  Q6384_RS06855 (Q6384_06855) - 1274870..1276024 (+) 1155 WP_010358927.1 NnrS family protein -
  Q6384_RS06860 (Q6384_06860) - 1276082..1276954 (-) 873 WP_003693577.1 prephenate dehydrogenase -
  Q6384_RS06865 (Q6384_06865) pilA 1277039..1277686 (+) 648 WP_103195281.1 nitrilase-related carbon-nitrogen hydrolase Machinery gene
  Q6384_RS06870 (Q6384_06870) - 1277802..1277942 (-) 141 WP_304672982.1 hypothetical protein -
  Q6384_RS06875 (Q6384_06875) - 1277956..1278714 (-) 759 Protein_1325 opacity family porin -
  Q6384_RS06880 (Q6384_06880) - 1279102..1279509 (-) 408 Protein_1326 pilin -
  Q6384_RS06885 (Q6384_06885) - 1279692..1280567 (+) 876 WP_003689397.1 DMT family transporter -
  Q6384_RS06890 (Q6384_06890) - 1280683..1281911 (+) 1229 Protein_1328 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22654.30 Da        Isoelectric Point: 5.0637

>NTDB_id=861660 Q6384_RS06865 WP_103195281.1 1277039..1277686(+) (pilA) [Neisseria gonorrhoeae strain NJ208756]
MDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGADWVLLPEYWVLMGANDTGKLALAEPLGGGRFQTALSETAKECGV
VLFGGTVPLQSPEARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALG
LTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALLD

Nucleotide


Download         Length: 648 bp        

>NTDB_id=861660 Q6384_RS06865 WP_103195281.1 1277039..1277686(+) (pilA) [Neisseria gonorrhoeae strain NJ208756]
ATGGACAAAATCAGAGTTGCCGCCGTGCAGATGGTGTCGGGCGTGTCGCCGGAAACCAACGTCGCCGCCATGAAACGCCT
GGTCGCACGGGCGGCGGAGCAGGGTGCGGATTGGGTGCTGCTGCCCGAATATTGGGTGCTGATGGGCGCAAACGATACCG
GCAAACTCGCACTTGCCGAGCCTTTGGGCGGCGGACGCTTTCAGACGGCATTGAGCGAAACGGCGAAAGAATGCGGCGTG
GTGCTGTTCGGCGGAACCGTGCCGCTGCAAAGCCCCGAAGCGCGCGGGATCGACATCGTGCTTGCCGACACCGCCGGCCG
CCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAAAAAGCCATTCCCGGCGCGCCGC
ACGAAATCATCGTCGTACTCGATGCCAATATCGGGCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTGGGG
CTGACGGGGCTTATCGTTACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCCGACCGCCCCGT
CCCCGTCCGCTACATCGGCGTGGGCGAAGGCATAGACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGC
TGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(90-214)

Carbon-nitrogen hydrolase (CN_hydrolase)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

79.769

80.465

0.642