Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q6378_RS07735 Genome accession   NZ_CP130889
Coordinates   1475638..1476033 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470638..1481033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS07730 (Q6378_07730) - 1475417..1475536 (+) 120 Protein_1491 competence protein ComE -
  Q6378_RS07735 (Q6378_07735) comE 1475638..1476033 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q6378_RS11810 - 1475967..1476114 (-) 148 Protein_1493 peptidase -
  Q6378_RS07740 (Q6378_07740) - 1476667..1476906 (-) 240 WP_012503951.1 membrane protein -
  Q6378_RS07745 (Q6378_07745) - 1476903..1477199 (-) 297 WP_003689859.1 hypothetical protein -
  Q6378_RS07750 (Q6378_07750) - 1477427..1477672 (+) 246 WP_154235562.1 hypothetical protein -
  Q6378_RS07755 (Q6378_07755) aroG 1477817..1478872 (+) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  Q6378_RS07760 (Q6378_07760) - 1478940..1479428 (+) 489 WP_025455834.1 dihydrofolate reductase -
  Q6378_RS07765 (Q6378_07765) - 1479458..1479934 (-) 477 WP_003689851.1 CYTH domain-containing protein -
  Q6378_RS07770 (Q6378_07770) - 1479946..1480374 (-) 429 WP_020997399.1 CopD family protein -
  Q6378_RS07775 (Q6378_07775) - 1480486..1480731 (+) 246 WP_003689849.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=861610 Q6378_RS07735 WP_003703428.1 1475638..1476033(+) (comE) [Neisseria gonorrhoeae strain NJ209649]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=861610 Q6378_RS07735 WP_003703428.1 1475638..1476033(+) (comE) [Neisseria gonorrhoeae strain NJ209649]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1