Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q6378_RS03135 Genome accession   NZ_CP130889
Coordinates   608043..609422 (-) Length   459 a.a.
NCBI ID   WP_003687778.1    Uniprot ID   A0AAX2BYT1
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 603043..614422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS03120 (Q6378_03120) recB 603164..606766 (+) 3603 WP_071198096.1 exodeoxyribonuclease V subunit beta Machinery gene
  Q6378_RS03125 (Q6378_03125) - 606805..607164 (+) 360 WP_003687781.1 rhodanese-like domain-containing protein -
  Q6378_RS03130 (Q6378_03130) - 607289..607768 (+) 480 WP_003687780.1 DUF302 domain-containing protein -
  Q6378_RS03135 (Q6378_03135) radA 608043..609422 (-) 1380 WP_003687778.1 DNA repair protein RadA Machinery gene
  Q6378_RS03140 (Q6378_03140) - 609804..610928 (+) 1125 WP_003687777.1 DNA cytosine methyltransferase -
  Q6378_RS03145 (Q6378_03145) - 610925..611962 (+) 1038 WP_003687776.1 restriction endonuclease PLD domain-containing protein -
  Q6378_RS03150 (Q6378_03150) - 611963..613852 (+) 1890 WP_003687775.1 Z1 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49536.99 Da        Isoelectric Point: 7.3938

>NTDB_id=861588 Q6378_RS03135 WP_003687778.1 608043..609422(-) (radA) [Neisseria gonorrhoeae strain NJ209649]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESFAAPEPKNARFQSWAADTSTVQSLSAVTAAEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRSQRLELHAEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLSVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIHGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=861588 Q6378_RS03135 WP_003687778.1 608043..609422(-) (radA) [Neisseria gonorrhoeae strain NJ209649]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGTCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCTTTGCCGCGCCCGAGCCGAAAAACGCCCGATTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCTGCCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TGCGCTCGCAACGTTTGGAACTGCACGCCGAAGGCGTAAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
TTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAAATGGGTATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGAGCGATTGCCGGCCCGCGCGTGCTGGAACATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTCGCGAT
GACCGAAAACGGTTTGAAAGGCGTATCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACA
CCCAAACGCCTCAGCGTCGGATTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTGTTAAACCGGCACGGCGGCATCGC
CTGTTTCGATCAGGATGTTTTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTCTTCGGTGAAATCGGCCTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAGCTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCCACGGCGTTTCAAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis NCTC 12261

47.02

98.693

0.464
  radA Streptococcus pneumoniae D39

47.124

98.475

0.464
  radA Streptococcus pneumoniae TIGR4

47.124

98.475

0.464
  radA Streptococcus pneumoniae R6

47.124

98.475

0.464
  radA Streptococcus pneumoniae Rx1

47.124

98.475

0.464
  radA Streptococcus mitis SK321

47.007

98.257

0.462