Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   Q6357_RS19940 Genome accession   NZ_CP130888
Coordinates   3885705..3886283 (-) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain 28M1-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3880705..3891283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS19920 (Q6357_19920) - 3880804..3881973 (-) 1170 WP_304717308.1 MFS transporter -
  Q6357_RS19925 (Q6357_19925) - 3882116..3883555 (+) 1440 WP_304717310.1 PLP-dependent aminotransferase family protein -
  Q6357_RS19930 (Q6357_19930) - 3883586..3884068 (-) 483 WP_008348662.1 hypothetical protein -
  Q6357_RS19935 (Q6357_19935) - 3884455..3885561 (-) 1107 WP_304717312.1 alanine racemase -
  Q6357_RS19940 (Q6357_19940) comK 3885705..3886283 (-) 579 WP_017366958.1 competence protein ComK Regulator
  Q6357_RS19945 (Q6357_19945) - 3886573..3886809 (+) 237 WP_008348804.1 IDEAL domain-containing protein -
  Q6357_RS19950 (Q6357_19950) - 3886868..3887728 (-) 861 WP_046343106.1 SDR family oxidoreductase -
  Q6357_RS19955 (Q6357_19955) - 3887871..3889403 (+) 1533 WP_304717315.1 FAD-dependent oxidoreductase -
  Q6357_RS19960 (Q6357_19960) - 3889495..3890790 (+) 1296 WP_007497200.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=861573 Q6357_RS19940 WP_017366958.1 3885705..3886283(-) (comK) [Bacillus altitudinis strain 28M1-1]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=861573 Q6357_RS19940 WP_017366958.1 3885705..3886283(-) (comK) [Bacillus altitudinis strain 28M1-1]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGTA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATATCACACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615