Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q6357_RS18120 Genome accession   NZ_CP130888
Coordinates   3538339..3538617 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain 28M1-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3533339..3543617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS18105 (Q6357_18105) - 3535330..3535998 (-) 669 WP_008345123.1 TrkA family potassium uptake protein -
  Q6357_RS18110 (Q6357_18110) - 3536036..3536878 (-) 843 WP_281201373.1 gamma-glutamylcyclotransferase -
  Q6357_RS18115 (Q6357_18115) - 3536906..3538195 (-) 1290 WP_007498613.1 ATP-binding protein -
  Q6357_RS18120 (Q6357_18120) abrB 3538339..3538617 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q6357_RS18125 (Q6357_18125) mreBH 3538894..3539901 (+) 1008 WP_017359401.1 rod-share determining protein MreBH -
  Q6357_RS18130 (Q6357_18130) - 3539976..3540107 (+) 132 WP_003210922.1 protein YkpC -
  Q6357_RS18135 (Q6357_18135) - 3540216..3541448 (+) 1233 WP_008345134.1 aminopeptidase -
  Q6357_RS18140 (Q6357_18140) - 3542019..3543014 (+) 996 WP_098680858.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=861558 Q6357_RS18120 WP_017359400.1 3538339..3538617(-) (abrB) [Bacillus altitudinis strain 28M1-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=861558 Q6357_RS18120 WP_017359400.1 3538339..3538617(-) (abrB) [Bacillus altitudinis strain 28M1-1]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543