Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   Q6357_RS09670 Genome accession   NZ_CP130888
Coordinates   1971513..1972154 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966513..1977154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS09655 (Q6357_09655) - 1968026..1969252 (+) 1227 WP_035701209.1 EAL and HDOD domain-containing protein -
  Q6357_RS09660 (Q6357_09660) - 1969289..1969642 (-) 354 WP_017367963.1 hypothetical protein -
  Q6357_RS09665 (Q6357_09665) - 1970077..1971432 (+) 1356 Protein_1851 sensor histidine kinase -
  Q6357_RS09670 (Q6357_09670) comA 1971513..1972154 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  Q6357_RS09675 (Q6357_09675) - 1972178..1972567 (+) 390 WP_008345855.1 hotdog fold thioesterase -
  Q6357_RS09680 (Q6357_09680) mnhG 1972658..1973032 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  Q6357_RS09685 (Q6357_09685) - 1973016..1973297 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  Q6357_RS09690 (Q6357_09690) - 1973297..1973776 (-) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  Q6357_RS09695 (Q6357_09695) - 1973783..1975261 (-) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  Q6357_RS09700 (Q6357_09700) - 1975254..1975595 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  Q6357_RS09705 (Q6357_09705) - 1975595..1976026 (-) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=861537 Q6357_RS09670 WP_007500477.1 1971513..1972154(+) (comA) [Bacillus altitudinis strain 28M1-1]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=861537 Q6357_RS09670 WP_007500477.1 1971513..1972154(+) (comA) [Bacillus altitudinis strain 28M1-1]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718