Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   Q6357_RS05225 Genome accession   NZ_CP130888
Coordinates   1068921..1070033 (-) Length   370 a.a.
NCBI ID   WP_061417594.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063921..1075033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS05210 (Q6357_05210) gyrA 1063946..1066450 (-) 2505 WP_017359864.1 DNA gyrase subunit A -
  Q6357_RS05215 (Q6357_05215) gyrB 1066684..1068600 (-) 1917 WP_024718422.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  Q6357_RS05220 (Q6357_05220) remB 1068658..1068903 (-) 246 WP_008360920.1 extracellular matrix regulator RemB -
  Q6357_RS05225 (Q6357_05225) recF 1068921..1070033 (-) 1113 WP_061417594.1 DNA replication/repair protein RecF Machinery gene
  Q6357_RS05230 (Q6357_05230) yaaA 1070050..1070265 (-) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  Q6357_RS05235 (Q6357_05235) dnaN 1070416..1071552 (-) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  Q6357_RS05240 (Q6357_05240) dnaA 1071749..1073089 (-) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  Q6357_RS05245 (Q6357_05245) rpmH 1073710..1073844 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  Q6357_RS05250 (Q6357_05250) rnpA 1073923..1074282 (+) 360 WP_008347592.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42602.66 Da        Isoelectric Point: 7.1297

>NTDB_id=861525 Q6357_RS05225 WP_061417594.1 1068921..1070033(-) (recF) [Bacillus altitudinis strain 28M1-1]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKRGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=861525 Q6357_RS05225 WP_061417594.1 1068921..1070033(-) (recF) [Bacillus altitudinis strain 28M1-1]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAGGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGTCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTGCTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

82.927

99.73

0.827