Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q6357_RS04990 Genome accession   NZ_CP130888
Coordinates   1025747..1026037 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020747..1031037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS04975 (Q6357_04975) - 1020935..1022137 (-) 1203 WP_056703747.1 G5 and 3D domain-containing protein -
  Q6357_RS04980 (Q6357_04980) - 1022382..1023149 (-) 768 WP_017359325.1 TatD family hydrolase -
  Q6357_RS04985 (Q6357_04985) metG 1023231..1025231 (-) 2001 WP_041506541.1 methionine--tRNA ligase -
  Q6357_RS04990 (Q6357_04990) abrB 1025747..1026037 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q6357_RS04995 (Q6357_04995) rsmI 1026082..1026963 (-) 882 WP_039170319.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  Q6357_RS05000 (Q6357_05000) - 1026938..1027237 (-) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  Q6357_RS05005 (Q6357_05005) - 1027224..1027967 (-) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  Q6357_RS05010 (Q6357_05010) yabA 1028023..1028376 (-) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  Q6357_RS05015 (Q6357_05015) - 1028391..1029218 (-) 828 WP_024719352.1 stage 0 sporulation family protein -
  Q6357_RS05020 (Q6357_05020) holB 1029221..1030210 (-) 990 WP_041506542.1 DNA polymerase III subunit delta' -
  Q6357_RS05025 (Q6357_05025) - 1030222..1030662 (-) 441 WP_008341898.1 YaaR family protein -
  Q6357_RS05030 (Q6357_05030) - 1030675..1031004 (-) 330 WP_012008640.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=861523 Q6357_RS04990 WP_087975202.1 1025747..1026037(+) (abrB) [Bacillus altitudinis strain 28M1-1]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=861523 Q6357_RS04990 WP_087975202.1 1025747..1026037(+) (abrB) [Bacillus altitudinis strain 28M1-1]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938