Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WCU01_RS15515 Genome accession   NZ_CP147587
Coordinates   3078099..3078728 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain GN06667     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3073099..3083728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU01_RS15500 (WCU01_15500) helD 3073341..3075395 (-) 2055 WP_021523911.1 DNA helicase IV -
  WCU01_RS15505 (WCU01_15505) yccF 3075518..3075964 (+) 447 WP_001261236.1 YccF domain-containing protein -
  WCU01_RS15510 (WCU01_15510) yccS 3075974..3078136 (+) 2163 WP_072251684.1 YccS family putative transporter -
  WCU01_RS15515 (WCU01_15515) sxy/tfoX 3078099..3078728 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WCU01_RS15520 (WCU01_15520) sulA 3078946..3079455 (+) 510 WP_021523910.1 SOS-induced cell division inhibitor SulA -
  WCU01_RS15525 (WCU01_15525) ompA 3079811..3080851 (+) 1041 WP_001682780.1 porin OmpA -
  WCU01_RS15530 (WCU01_15530) matP 3080929..3081381 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  WCU01_RS15535 (WCU01_15535) ycbZ 3081567..3083327 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=861508 WCU01_RS15515 WP_000839153.1 3078099..3078728(-) (sxy/tfoX) [Escherichia coli strain GN06667]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=861508 WCU01_RS15515 WP_000839153.1 3078099..3078728(-) (sxy/tfoX) [Escherichia coli strain GN06667]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACTTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1