Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q5Z11_RS19155 Genome accession   NZ_CP130832
Coordinates   4328209..4329723 (+) Length   504 a.a.
NCBI ID   WP_303747858.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 610A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4323209..4334723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5Z11_RS19130 speA 4323394..4325283 (-) 1890 WP_303747855.1 arginine decarboxylase -
  Q5Z11_RS19135 speE 4325518..4326375 (+) 858 WP_282267936.1 polyamine aminopropyltransferase -
  Q5Z11_RS19140 - 4326641..4327297 (+) 657 WP_303747856.1 RIO1 family regulatory kinase/ATPase -
  Q5Z11_RS19145 - 4327447..4327785 (-) 339 WP_057628415.1 P-II family nitrogen regulator -
  Q5Z11_RS19150 - 4327941..4328198 (+) 258 WP_303747857.1 ubiquinone biosynthesis accessory factor UbiK -
  Q5Z11_RS19155 comM 4328209..4329723 (+) 1515 WP_303747858.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q5Z11_RS19160 - 4329934..4331460 (+) 1527 WP_303747859.1 triacylglycerol lipase -
  Q5Z11_RS19165 - 4331531..4333267 (-) 1737 WP_345783918.1 PLP-dependent aminotransferase family protein -
  Q5Z11_RS19170 - 4333266..4334444 (+) 1179 WP_303747861.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53701.13 Da        Isoelectric Point: 7.5255

>NTDB_id=861508 Q5Z11_RS19155 WP_303747858.1 4328209..4329723(+) (comM) [Stenotrophomonas sp. 610A2]
MSLALVYSRARAGVHAPLVQVEVHLSGGLPFTQIVGLPEAAVRESRDRVRAAILCAQFDYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRNALANYEFIGELALTGELRAVDGALPAAISSADAKRCLIVPPGNAGEAALAQHAEVKVARTL
LEVCAALAGSKQLPDAQVPHTDPATPADLSDVRGQQHARRALEIAAAGGHHLLLLGSPGCGKTLLASRLPGILPEASEEE
ALESAAIASISGRGVDPSRWRQRPYRSPHHTASAVALVGGGSHPRPGEISLAHNGVLFLDELPEWSRHALEVLREPLESG
TVTVSRAARSMEFPARFQLVAAMNPCPCGWAGDSSGRCRCSAESIRRYRARISGPLLDRIDLHLQVPRLAPSELRGDASP
GESSAEVRERVMRARTRQLERAGKANAHLGQAETLRDCGLSTSDADLLEQAMERLQLSARSMHRILRVARTIADLAGEAA
IQRVHLTEAIGYRQLDRSEVGGEG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=861508 Q5Z11_RS19155 WP_303747858.1 4328209..4329723(+) (comM) [Stenotrophomonas sp. 610A2]
GTGAGCCTGGCGCTGGTGTACAGCCGCGCCCGTGCGGGTGTGCACGCACCACTGGTACAGGTGGAAGTACACCTGTCCGG
CGGCCTGCCCTTCACCCAGATCGTCGGCCTCCCCGAGGCCGCGGTGCGGGAATCACGCGACCGGGTGCGTGCCGCCATCC
TCTGCGCGCAGTTCGACTATCCGGCGCGCCGCATCACCATCAATCTGGCGCCAGCTGATCTGCCCAAGGAAGGCGGGCGT
TTTGATCTGCCCATCGCGCTCGGCATTCTTGCTGCCAGTGGCCAGATCGACCGCAATGCGCTGGCCAATTACGAGTTCAT
CGGCGAGCTGGCGCTGACCGGTGAACTGCGCGCGGTAGATGGCGCCCTGCCCGCGGCCATTTCCTCCGCCGATGCCAAAC
GCTGCCTGATCGTGCCGCCCGGCAATGCGGGTGAAGCGGCGCTGGCCCAACACGCCGAAGTCAAAGTCGCACGCACGCTG
CTGGAAGTCTGCGCAGCGCTGGCCGGCAGCAAGCAACTACCCGACGCGCAGGTACCGCACACCGACCCCGCAACGCCTGC
AGACCTGAGTGATGTGCGCGGCCAGCAACATGCGCGACGCGCCTTGGAGATTGCTGCAGCCGGCGGTCATCATCTCCTGC
TGCTGGGCTCACCAGGCTGCGGCAAGACCCTGCTGGCATCGCGCCTGCCCGGCATCCTGCCCGAAGCAAGCGAGGAAGAG
GCGCTGGAGTCCGCCGCCATTGCTTCGATCAGCGGTCGCGGCGTTGATCCGAGTCGCTGGCGACAGCGCCCCTACAGATC
ACCGCATCACACGGCCAGCGCGGTTGCCCTGGTTGGCGGCGGCTCACATCCGCGCCCTGGCGAGATTTCGCTCGCGCACA
ACGGCGTGTTGTTCCTGGACGAATTGCCGGAGTGGAGCCGACATGCGTTGGAAGTGCTGCGCGAGCCACTGGAGTCCGGC
ACAGTCACCGTCTCACGCGCGGCGCGCAGCATGGAGTTCCCTGCGCGCTTTCAACTGGTTGCTGCCATGAACCCTTGCCC
TTGCGGCTGGGCCGGTGACAGCAGTGGCCGCTGCCGCTGCTCTGCAGAAAGCATACGTCGCTATCGCGCACGCATTTCCG
GGCCATTGCTGGACCGCATTGATCTGCATCTGCAGGTGCCGCGGTTGGCACCGAGTGAATTGCGTGGCGACGCCTCACCG
GGCGAAAGCAGTGCCGAGGTGCGCGAGCGGGTAATGCGGGCACGCACGCGACAGCTGGAGCGAGCAGGCAAGGCCAATGC
GCACCTTGGGCAAGCGGAGACCTTGCGCGACTGCGGTTTGTCGACTTCCGATGCTGATCTGCTCGAGCAGGCAATGGAGC
GACTGCAGCTGTCGGCACGCTCGATGCACCGGATCCTGCGGGTGGCAAGGACGATTGCTGATCTTGCCGGTGAAGCTGCG
ATCCAACGGGTTCATCTGACCGAGGCGATTGGCTATCGGCAGCTGGATCGGAGTGAGGTTGGGGGTGAGGGGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.114

99.008

0.565
  comM Glaesserella parasuis strain SC1401

55.952

100

0.56
  comM Haemophilus influenzae Rd KW20

55.556

100

0.556
  comM Vibrio campbellii strain DS40M4

55.912

99.008

0.554
  comM Legionella pneumophila str. Paris

50.699

99.405

0.504
  comM Legionella pneumophila strain ERS1305867

50.699

99.405

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.943

100

0.472