Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q5420_RS25465 Genome accession   NZ_CP130751
Coordinates   5456382..5456939 (+) Length   185 a.a.
NCBI ID   WP_061189624.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5451382..5461939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5420_RS25445 (Q5420_25445) pilR 5452658..5453995 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  Q5420_RS25450 (Q5420_25450) thiO 5454041..5455135 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  Q5420_RS25455 (Q5420_25455) - 5455270..5455779 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  Q5420_RS25460 (Q5420_25460) - 5455885..5456391 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  Q5420_RS25465 (Q5420_25465) pilV 5456382..5456939 (+) 558 WP_061189624.1 type 4a pilus minor pilin PilV Machinery gene
  Q5420_RS25470 (Q5420_25470) pilW 5456936..5457760 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  Q5420_RS25475 (Q5420_25475) pilX 5457757..5458344 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  Q5420_RS25480 (Q5420_25480) pilY1 5458356..5461847 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19994.08 Da        Isoelectric Point: 7.8710

>NTDB_id=861386 Q5420_RS25465 WP_061189624.1 5456382..5456939(+) (pilV) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVDRNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDCLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=861386 Q5420_RS25465 WP_061189624.1 5456382..5456939(+) (pilV) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Control]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGATCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACTGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984