Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   Q5H80_RS16055 Genome accession   NZ_CP130749
Coordinates   391371..392465 (+) Length   364 a.a.
NCBI ID   WP_304570418.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 386371..397465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS16025 (Q5H80_16025) - 388111..388347 (-) 237 WP_304570412.1 hypothetical protein -
  Q5H80_RS16030 (Q5H80_16030) - 388512..389138 (-) 627 WP_304570413.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  Q5H80_RS16035 (Q5H80_16035) - 389320..389634 (-) 315 WP_004730049.1 DUF496 family protein -
  Q5H80_RS16040 (Q5H80_16040) - 389830..390030 (+) 201 WP_304570415.1 hypothetical protein -
  Q5H80_RS16045 (Q5H80_16045) - 390094..390750 (+) 657 WP_304570416.1 YceH family protein -
  Q5H80_RS16050 (Q5H80_16050) - 390751..391065 (+) 315 WP_304570417.1 GIY-YIG nuclease family protein -
  Q5H80_RS16055 (Q5H80_16055) luxP 391371..392465 (+) 1095 WP_304570418.1 substrate-binding domain-containing protein Regulator
  Q5H80_RS16060 (Q5H80_16060) luxQ 392465..395038 (+) 2574 WP_304570419.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  Q5H80_RS16065 (Q5H80_16065) - 395142..395492 (+) 351 WP_304570420.1 HopJ type III effector protein -
  Q5H80_RS16070 (Q5H80_16070) - 395741..396049 (-) 309 WP_304570421.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41180.34 Da        Isoelectric Point: 4.9359

>NTDB_id=861324 Q5H80_RS16055 WP_304570418.1 391371..392465(+) (luxP) [Vibrio sp. SNU_ST1]
MKRLLILLGVAVFSASALSHGTHVLNGYWEYQDYLTKFPEQKALTDKMVEAVQNPPVPLRQVQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRDNANPSQQSISLQEAIENKTDYLIFTLETTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHMTGSLKLADYFKQVSEPDSKYSVLYRSEGYISDARGDTFIHDVNSDTNFALKSSFYTKSS
KESGYQAAKISLANDKDLNFIYACSTDVALGAAEAIRESGRDVLVNGWGGGSAELEAIARGDLDVTVMRMNDDTGIAMAE
AIKWDLTGLEVPTVYSGEFEIVTKDDSPDRILELKQRAFRYSDQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=861324 Q5H80_RS16055 WP_304570418.1 391371..392465(+) (luxP) [Vibrio sp. SNU_ST1]
ATGAAACGTTTACTTATATTATTAGGAGTTGCCGTGTTTTCTGCGTCTGCTCTCTCCCACGGTACTCACGTCTTGAATGG
CTATTGGGAATATCAGGATTACCTCACTAAATTTCCAGAGCAAAAAGCATTGACCGATAAAATGGTTGAAGCTGTGCAAA
ATCCCCCTGTGCCATTGAGGCAAGTTCAGGATGAACCTATCACGATTTCAGTTGTGTACCCGGGGCAACAGATCTCTGAT
TATTGGGTTCGTAATATCCAAGCCTTTGAGAAACGCCTAGATAAATTGAGGATTAATTATCAAATAAATCAGGTTTTTAC
TCGTGATAATGCCAACCCCTCTCAGCAGAGTATCTCTTTGCAAGAAGCGATTGAAAATAAAACGGATTATTTGATTTTTA
CGTTAGAGACGACGCGACACCGTAAGTTTATTGAGCATGTGTTGAGCTCAACGGACACCAAATTGATTTTGCAAAATATT
ACCACGCCAGTACGCGCATGGGCAGATAGGCAGCCGTTCATGTACGTGGGTTTCGACCATATGACAGGTAGCTTAAAGCT
GGCGGATTATTTCAAACAAGTGAGTGAACCGGACAGCAAGTATTCTGTGTTATATCGTTCTGAAGGTTATATTAGTGATG
CTCGTGGAGATACCTTTATCCATGATGTGAATTCTGATACCAACTTTGCTCTTAAGTCGTCGTTTTACACTAAATCAAGT
AAAGAGAGCGGTTACCAAGCAGCTAAAATCAGCCTAGCTAACGATAAGGATCTAAACTTTATTTATGCATGCTCAACGGA
TGTTGCTCTGGGCGCAGCAGAAGCTATTCGAGAATCTGGTCGAGATGTCTTAGTTAATGGCTGGGGAGGCGGCTCTGCAG
AGTTGGAAGCTATAGCAAGGGGCGACTTAGATGTTACGGTCATGCGCATGAATGATGATACGGGTATTGCGATGGCAGAG
GCAATTAAATGGGATCTTACAGGGTTGGAAGTTCCTACCGTTTATTCAGGTGAGTTTGAAATTGTGACTAAAGATGATTC
TCCAGACCGTATTTTAGAACTTAAGCAGCGAGCATTTAGGTACTCAGACCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.5

100

0.632