Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   Q5H80_RS13195 Genome accession   NZ_CP130748
Coordinates   2970742..2971746 (+) Length   334 a.a.
NCBI ID   WP_086048605.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2965742..2976746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS13180 (Q5H80_13180) - 2966112..2967419 (-) 1308 WP_304565421.1 malic enzyme-like NAD(P)-binding protein -
  Q5H80_RS13185 (Q5H80_13185) rpmE 2967751..2967969 (-) 219 WP_009848884.1 50S ribosomal protein L31 -
  Q5H80_RS13190 (Q5H80_13190) priA 2968300..2970501 (+) 2202 WP_304565425.1 primosomal protein N' -
  Q5H80_RS13195 (Q5H80_13195) cytR 2970742..2971746 (+) 1005 WP_086048605.1 DNA-binding transcriptional regulator CytR Regulator
  Q5H80_RS13200 (Q5H80_13200) - 2971869..2972408 (+) 540 WP_304565428.1 SPOR domain-containing protein -
  Q5H80_RS13205 (Q5H80_13205) hslV 2972647..2973195 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  Q5H80_RS13210 (Q5H80_13210) hslU 2973254..2974594 (+) 1341 WP_304565436.1 HslU--HslV peptidase ATPase subunit -
  Q5H80_RS13215 (Q5H80_13215) - 2974750..2975667 (+) 918 WP_304565438.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  Q5H80_RS13220 (Q5H80_13220) rraA 2975741..2976259 (+) 519 WP_304565440.1 ribonuclease E activity regulator RraA -
  Q5H80_RS13225 (Q5H80_13225) zapB 2976369..2976611 (-) 243 WP_009848877.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36527.06 Da        Isoelectric Point: 6.4911

>NTDB_id=861317 Q5H80_RS13195 WP_086048605.1 2970742..2971746(+) (cytR) [Vibrio sp. SNU_ST1]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDVLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=861317 Q5H80_RS13195 WP_086048605.1 2970742..2971746(+) (cytR) [Vibrio sp. SNU_ST1]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTTTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAGCGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCGTATTTCGCAGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTCGTTTTACTGGGTGATAGCGGCCAACAGAAGAAGCGTGAGTCTTCATT
TGTTAACTTAGTATTCACCAAACAAGCTGACGGCATGCTACTACTTGGCACCGACCACCCGTTTGATGTCAGTAAGCCTG
AACAAAAAAATTTACCGCCGATGGTGATGGCGTGTGAGTTTGCCCCAGAGCTTGAACTCCCTACCGTACACATCGATAAC
CTGACCTCAGCATTTGAAGCGGTAAACTACCTAGCTCAGCTAGGTCATAAACGTATTGCGCAAATCTCTGGGCCAGTATC
GGCAACGCTTTGTAAGTTCCGTCAACAAGGCTACCAACAAGCGCTACGTCGCGCTGGAGTATCAATGAATCCAGCCTACA
GCACTGTCGGTGACTTTACCTTTGAAGCCGGCGCTCAAGCAGTTCGTCAATTACTCGCTCTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCCATCGGTGCAATTCAAGAAGCGAAGAAGTTGGGCTTGCGCGTACCTCAAGATCT
ATCGATTGTCGGCTTCGATGATATCCAGTTTGCTCAATACTGCGATCCGCCGCTAACCACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCAATGCTGATGATGCTCGACGTACTTAAAGGCAACGATGTACAAGCTGGTTCACGCCTGCTTGAA
GCTAAATTAGTCGTTCGAGGCAGTACTGCGCCACCTCGAATGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871