Detailed information NTG0861307

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Q5H80_RS11780
• Genome accession: NZ_CP130748
• Coordinates: 2699302..2700282 (-)
• Length: 326 a.a.
• NCBI ID: WP_009847636.1
• Uniprot ID: A0A2N7NF20
• Organism: Vibrio sp. SNU_ST1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2694302..2705282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5H80_RS11765 (Q5H80_11765)	recA	2694791..2695831 (-)	1041	WP_009847633.1	recombinase RecA	Machinery gene
Q5H80_RS11770 (Q5H80_11770)	pncC	2695971..2696465 (-)	495	WP_304569413.1	nicotinamide-nucleotide amidase	-
Q5H80_RS11775 (Q5H80_11775)	mutS	2696590..2699151 (+)	2562	WP_304564853.1	DNA mismatch repair protein MutS	-
Q5H80_RS11780 (Q5H80_11780)	rpoS	2699302..2700282 (-)	981	WP_009847636.1	RNA polymerase sigma factor RpoS	Regulator
Q5H80_RS11785 (Q5H80_11785)	nlpD	2700381..2701295 (-)	915	WP_304564854.1	murein hydrolase activator NlpD	-
Q5H80_RS11790 (Q5H80_11790)	-	2701331..2701957 (-)	627	WP_304564855.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Q5H80_RS11795 (Q5H80_11795)	surE	2701958..2702701 (-)	744	WP_304564856.1	5'/3'-nucleotidase SurE	-
Q5H80_RS11800 (Q5H80_11800)	truD	2702778..2703824 (-)	1047	WP_304564857.1	tRNA pseudouridine(13) synthase TruD	-
Q5H80_RS11805 (Q5H80_11805)	ispF	2703847..2704326 (-)	480	WP_029223073.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Q5H80_RS11810 (Q5H80_11810)	ispD	2704329..2705030 (-)	702	WP_304564858.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37250.43 Da
• Isoelectric Point: 5.2708

>NTDB_id=861307 Q5H80_RS11780 WP_009847636.1 2699302..2700282(-) (rpoS) [Vibrio sp. SNU_ST1]
MSISNAVTKEEFDLNQATTEQEALGKAKRTVTKKTEAKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=861307 Q5H80_RS11780 WP_009847636.1 2699302..2700282(-) (rpoS) [Vibrio sp. SNU_ST1]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACAGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAGACTGAAGTTACGTCTAAAAGCTTAGATGCGACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAGGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGCGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGCTTGATCCGCGCCGTAGAGAAGTTTGATCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAACATCTACCTACGTACCGCAAGAGAACTTTCACAAAAACTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGACAAACCTGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCTATTGGTGGTGATGGTGAGAAAGCGCTACTGGATATAATTCCGGACATCAACAACTCAGACCCTGAG
GTTTCAACTCAAGATAGCGATATTAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCATCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTGACTCGTGAAC
GTGTTCGTCAAATTCAAGTTGAAGGGCTTCGTCGTCTACGTGAGATTCTTATCAAGCAAGGCTTGAATATGGAAAACCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

3D structure

• AlphaFold DB: A0A2N7NF20

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.138	100	0.831