Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   WCU32_RS03930 Genome accession   NZ_CP147574
Coordinates   809678..810907 (-) Length   409 a.a.
NCBI ID   WP_021572938.1    Uniprot ID   -
Organism   Escherichia coli strain GN03590     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 804678..815907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU32_RS03910 (WCU32_03910) - 805024..806394 (+) 1371 WP_000867867.1 hypothetical protein -
  WCU32_RS03915 (WCU32_03915) - 806391..807107 (+) 717 WP_000600935.1 glycosyltransferase family 2 protein -
  WCU32_RS03920 (WCU32_03920) - 807110..807478 (+) 369 WP_000821214.1 hypothetical protein -
  WCU32_RS03925 (WCU32_03925) - 807475..809052 (+) 1578 WP_001376030.1 nucleotidyltransferase family protein -
  WCU32_RS03930 (WCU32_03930) kpsS 809678..810907 (-) 1230 WP_021572938.1 capsular biosynthesis protein Regulator
  WCU32_RS03935 (WCU32_03935) - 810942..812969 (-) 2028 WP_000579245.1 capsular polysaccharide biosynthesis protein -
  WCU32_RS03940 (WCU32_03940) kdsB 812966..813706 (-) 741 WP_000030762.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WCU32_RS03945 (WCU32_03945) - 813716..815392 (-) 1677 WP_001376029.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 48546.95 Da        Isoelectric Point: 10.0506

>NTDB_id=861306 WCU32_RS03930 WP_021572938.1 809678..810907(-) (kpsS) [Escherichia coli strain GN03590]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKLLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGFKKNDNPVH
SITTEANQL

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=861306 WCU32_RS03930 WP_021572938.1 809678..810907(-) (kpsS) [Escherichia coli strain GN03590]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGATGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGACAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGCTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGGGCTTTAAAAAAAATGATAACCCTGTCCAT
AGTATCACAACCGAAGCCAATCAACTATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.051

95.844

0.384