Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Q5H80_RS11600 Genome accession   NZ_CP130748
Coordinates   2663045..2663563 (-) Length   172 a.a.
NCBI ID   WP_304564841.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2658045..2668563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS11575 (Q5H80_11575) rimM 2658054..2658608 (-) 555 WP_009847609.1 ribosome maturation factor RimM -
  Q5H80_RS11580 (Q5H80_11580) rpsP 2658635..2658883 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  Q5H80_RS11585 (Q5H80_11585) ffh 2659096..2660490 (-) 1395 WP_004735506.1 signal recognition particle protein -
  Q5H80_RS11590 (Q5H80_11590) - 2660691..2661485 (+) 795 WP_065678058.1 inner membrane protein YpjD -
  Q5H80_RS11595 (Q5H80_11595) - 2661613..2662884 (+) 1272 WP_304564840.1 HlyC/CorC family transporter -
  Q5H80_RS11600 (Q5H80_11600) luxS 2663045..2663563 (-) 519 WP_304564841.1 S-ribosylhomocysteine lyase Regulator
  Q5H80_RS11605 (Q5H80_11605) - 2663588..2664238 (-) 651 WP_304564842.1 hypothetical protein -
  Q5H80_RS11610 (Q5H80_11610) gshA 2664249..2665817 (-) 1569 WP_304564843.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18972.78 Da        Isoelectric Point: 4.8281

>NTDB_id=861304 Q5H80_RS11600 WP_304564841.1 2663045..2663563(-) (luxS) [Vibrio sp. SNU_ST1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSTVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMKDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANVIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=861304 Q5H80_RS11600 WP_304564841.1 2663045..2663563(-) (luxS) [Vibrio sp. SNU_ST1]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCAGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGACACTATAACGGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAGAGGTATCC
ATACTCTAGAGCACTTATACGCTGGATTCATGCGTGCTCATCTCAATGGTTCTACGGTTGAGATCATTGATATTTCACCG
ATGGGTTGTCGTACAGGTTTCTACATGAGCTTGATTGGTACGCCTTCTGAGCAGCAAGTGGCTGACGCTTGGTTAGCGGC
TATGAAAGACGTATTGAAAGTTGAGAATCAGAATAAGATCCCTGAGTTGAATGAATACCAATGTGGTACAGCTGCGATGC
ACTCTTTGGATGAAGCGAAAGAGATTGCTAATGTCATCATTGCTGCAGGTATCTCTGTAAACAAAAATGATGAATTGGCA
TTACCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89