Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   Q5H80_RS07820 Genome accession   NZ_CP130748
Coordinates   1799147..1800328 (+) Length   393 a.a.
NCBI ID   WP_304564135.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1797621..1832755 1799147..1800328 within 0


Gene organization within MGE regions


Location: 1797621..1832755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS07810 (Q5H80_07810) - 1797621..1798379 (+) 759 WP_304564134.1 helix-turn-helix domain-containing protein -
  Q5H80_RS07815 (Q5H80_07815) - 1798513..1798833 (+) 321 Protein_1489 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  Q5H80_RS07820 (Q5H80_07820) cqsA 1799147..1800328 (+) 1182 WP_304564135.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Q5H80_RS07825 (Q5H80_07825) - 1800474..1802522 (-) 2049 WP_304564136.1 response regulator -
  Q5H80_RS07830 (Q5H80_07830) - 1802862..1803710 (-) 849 WP_304564137.1 YadA-like family protein -
  Q5H80_RS07835 (Q5H80_07835) - 1803797..1804675 (-) 879 WP_304564138.1 LysR family transcriptional regulator -
  Q5H80_RS07840 (Q5H80_07840) - 1804917..1806803 (-) 1887 WP_304564139.1 methyl-accepting chemotaxis protein -
  Q5H80_RS07845 (Q5H80_07845) - 1807277..1807948 (-) 672 WP_304564140.1 hypothetical protein -
  Q5H80_RS07850 (Q5H80_07850) - 1808025..1808537 (-) 513 WP_304564141.1 cytochrome c -
  Q5H80_RS07855 (Q5H80_07855) - 1808672..1809295 (+) 624 WP_304564142.1 cytochrome b/b6 domain-containing protein -
  Q5H80_RS07860 (Q5H80_07860) - 1809584..1810279 (+) 696 WP_017102710.1 VC0807 family protein -
  Q5H80_RS07865 (Q5H80_07865) - 1810672..1810947 (+) 276 WP_009846966.1 HU family DNA-binding protein -
  Q5H80_RS07870 (Q5H80_07870) - 1810974..1811117 (+) 144 WP_304564144.1 hypothetical protein -
  Q5H80_RS07875 (Q5H80_07875) - 1811277..1812827 (-) 1551 WP_304564146.1 PAS domain-containing methyl-accepting chemotaxis protein -
  Q5H80_RS07880 (Q5H80_07880) - 1813886..1814089 (+) 204 WP_304564147.1 hypothetical protein -
  Q5H80_RS07885 (Q5H80_07885) - 1814070..1814597 (-) 528 WP_304564148.1 PaaI family thioesterase -
  Q5H80_RS07890 (Q5H80_07890) - 1814642..1814920 (+) 279 WP_304564149.1 DUF134 domain-containing protein -
  Q5H80_RS07895 (Q5H80_07895) nqrM 1814985..1815182 (-) 198 WP_304564150.1 (Na+)-NQR maturation NqrM -
  Q5H80_RS07900 (Q5H80_07900) - 1815179..1815625 (-) 447 WP_304564151.1 NifB/NifX family molybdenum-iron cluster-binding protein -
  Q5H80_RS07905 (Q5H80_07905) - 1815906..1816409 (+) 504 WP_304564152.1 YcxB family protein -
  Q5H80_RS07910 (Q5H80_07910) - 1816577..1818388 (-) 1812 WP_304564153.1 PLP-dependent transferase -
  Q5H80_RS07915 (Q5H80_07915) - 1818531..1818986 (+) 456 WP_017109732.1 Lrp/AsnC family transcriptional regulator -
  Q5H80_RS07920 (Q5H80_07920) - 1819125..1820132 (+) 1008 WP_304564155.1 tetratricopeptide repeat protein -
  Q5H80_RS07925 (Q5H80_07925) - 1820290..1820628 (-) 339 WP_009846986.1 hypothetical protein -
  Q5H80_RS07930 (Q5H80_07930) - 1820797..1820949 (+) 153 Protein_1512 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  Q5H80_RS07935 (Q5H80_07935) - 1821099..1821971 (-) 873 WP_304564156.1 patatin-like phospholipase family protein -
  Q5H80_RS07940 (Q5H80_07940) - 1822315..1822869 (-) 555 WP_304564157.1 hypothetical protein -
  Q5H80_RS07945 (Q5H80_07945) - 1823278..1824786 (+) 1509 WP_304564158.1 DUF3360 domain-containing protein -
  Q5H80_RS07950 (Q5H80_07950) - 1825242..1826444 (+) 1203 WP_304569398.1 YbfB/YjiJ family MFS transporter -
  Q5H80_RS07955 (Q5H80_07955) - 1826459..1827091 (+) 633 WP_304564159.1 glutathione S-transferase family protein -
  Q5H80_RS07960 (Q5H80_07960) - 1827207..1828133 (-) 927 WP_304564160.1 hypothetical protein -
  Q5H80_RS07965 (Q5H80_07965) - 1828434..1829306 (-) 873 WP_304564161.1 alpha/beta fold hydrolase -
  Q5H80_RS07970 (Q5H80_07970) - 1829540..1832755 (-) 3216 WP_304564162.1 ATP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43836.96 Da        Isoelectric Point: 6.5008

>NTDB_id=861292 Q5H80_RS07820 WP_304564135.1 1799147..1800328(+) (cqsA) [Vibrio sp. SNU_ST1]
MSDTTKNKPLPSFIEERLNFYIQDLITQNQSQNHLVLGKRPQRNAVVMQSNDYLALSHNKPIQDAHQAAIIEHDDNVVMS
AIFLQDEKSKPAFETELANYVGMESGLLSQSGWAANIGLLQTICPPGTPVYIDFFAHMSLWEGIRAAGGVAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGEKGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSRTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKREALFMRAQSLITGLKRIGFNIRSESQ
IVSLECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=861292 Q5H80_RS07820 WP_304564135.1 1799147..1800328(+) (cqsA) [Vibrio sp. SNU_ST1]
ATGAGTGATACAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTCATTAC
CCAGAACCAAAGCCAAAATCACTTGGTATTGGGTAAACGACCTCAGCGCAACGCCGTTGTGATGCAGAGCAATGATTACT
TAGCACTGTCACACAACAAACCGATCCAAGACGCCCATCAAGCGGCGATTATCGAACACGATGACAACGTAGTGATGTCT
GCAATTTTCTTACAAGATGAAAAGTCTAAACCTGCGTTTGAAACCGAACTCGCGAACTATGTCGGAATGGAGAGCGGTTT
GCTTTCTCAGTCGGGTTGGGCGGCCAATATTGGGCTATTGCAAACCATCTGCCCACCGGGCACACCTGTGTACATTGACT
TTTTTGCACACATGTCGCTATGGGAAGGCATTCGCGCTGCCGGCGGCGTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGTTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGATTCGGTTTACAGTACTATTGGGACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAATTTGATTGTGCCGTCGTCGTTGATGAATCCCACTCACTAGGGACAC
ACGGAGAAAAAGGTGCTGGATTAGTTCATGCATTGGGGCTCACTAACCAAGTCGACTTCATCACCGTCAGCTTGGCAAAA
ACCTTCGCTTACCGCGCAGGGGCCATCCTAGGTCCTAAACAACTATCTAGAACCTTACCGTTTGTGGCGTACCCTGCGAT
TTTTAGCTCAACCGTATTGCCGCAAGAAGTGATTCGCTTAGAGAAAACGTTGGAAGTAATTAAAGGAGCAGATGACAAAC
GCGAAGCCCTATTTATGCGAGCACAGTCGCTCATTACGGGCCTCAAACGGATTGGTTTTAACATCCGTAGTGAATCTCAA
ATCGTCTCGCTAGAGTGCGGTAATGAAAGAAATACAGAGCGAGTGCGCGATTTCCTCGAAGAGCGTAATGTGTTCGGCGC
GGTGTTCTGCCGTCCTGCAACGGGTAGGAACAAGAACATCATCCGATTTTCAGTCAATGCCGACATGACTCCAAGAGACA
TCGACCATGTTCTCACCGTTTGTCATGAGGCATACCATCACCCGGAGTTAGAATTCATATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.039

98.473

0.542