Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   Q5H80_RS07765 Genome accession   NZ_CP130748
Coordinates   1788840..1790264 (+) Length   474 a.a.
NCBI ID   WP_304564059.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783840..1795264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS07745 (Q5H80_07745) - 1784472..1785422 (+) 951 WP_304569397.1 chromosome partitioning protein ParA -
  Q5H80_RS07750 (Q5H80_07750) - 1785427..1786461 (-) 1035 WP_304564056.1 AraC family transcriptional regulator -
  Q5H80_RS07755 (Q5H80_07755) - 1786680..1787693 (+) 1014 WP_304564057.1 DUF2804 domain-containing protein -
  Q5H80_RS07760 (Q5H80_07760) - 1787784..1788632 (+) 849 WP_304564058.1 sterol desaturase family protein -
  Q5H80_RS07765 (Q5H80_07765) sbcB 1788840..1790264 (+) 1425 WP_304564059.1 exodeoxyribonuclease I Machinery gene
  Q5H80_RS07770 (Q5H80_07770) - 1790290..1790661 (+) 372 WP_304564060.1 CidA/LrgA family protein -
  Q5H80_RS07775 (Q5H80_07775) - 1790664..1791341 (+) 678 WP_304564061.1 LrgB family protein -
  Q5H80_RS07780 (Q5H80_07780) cdd 1791627..1792514 (+) 888 WP_304564062.1 cytidine deaminase -
  Q5H80_RS07785 (Q5H80_07785) purT 1792682..1793857 (+) 1176 WP_304564063.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  Q5H80_RS07790 (Q5H80_07790) - 1793988..1794641 (-) 654 WP_304564064.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54713.97 Da        Isoelectric Point: 4.8199

>NTDB_id=861291 Q5H80_RS07765 WP_304564059.1 1788840..1790264(+) (sbcB) [Vibrio sp. SNU_ST1]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLFDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKTAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=861291 Q5H80_RS07765 WP_304564059.1 1788840..1790264(+) (sbcB) [Vibrio sp. SNU_ST1]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCACCTGAAGCTGCATTGATCACCCGTATCACACCACAAAAAGCAGCTTCTCAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCTGAGTTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
CGAGGTAACGCGTTACACCTGCTACCGAAATTTCATTGACCCATATGCGTGGAGCTGGCAGAACGGCAACTCACGTTGGG
ATCTATTTGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTATCCA
AGCTTTAAATTGGAACACTTATCGGTGGCAAACGGCATTGAACATGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATAGAGTTAGCGAAGAAGCTGAAAACTGCACAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTTGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGATGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAATGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGCATCGATCGCCAACAATGCTTGAAGAACTTGGCTCTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGAGAGTACGAAAAGAGTGATGATGTTGATACTCACCTTTACGACGGTTTCTTTTCTCCAG
CTGATAAGACCGCGATGAACATCATTCGCGAAACTGACCCGAACAACTTGGCAGCTTTAGATATCACCTTCAGCGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCGCGTAACTTCCCATGGACACTTGACGAAGCTGAGCAACTAAAATGGGC
AAACCATTGTCGTGAGTTTTACGAGTGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.11

99.789

0.759