Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q3H53_RS13960 Genome accession   NZ_CP130696
Coordinates   2924870..2926396 (-) Length   508 a.a.
NCBI ID   WP_002742386.1    Uniprot ID   A0A822L4U4
Organism   Microcystis aeruginosa PCC 7806     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2919870..2931396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3H53_RS13925 (Q3H53_002783) - 2920871..2921680 (-) 810 WP_002742375.1 Uma2 family endonuclease -
  Q3H53_RS13930 (Q3H53_002784) - 2921866..2922795 (-) 930 WP_002789021.1 YbhN family protein -
  Q3H53_RS13935 (Q3H53_002785) - 2922788..2923246 (-) 459 WP_002742377.1 DUF29 domain-containing protein -
  Q3H53_RS13940 (Q3H53_002786) - 2923259..2923714 (-) 456 WP_002742378.1 DUF29 domain-containing protein -
  Q3H53_RS13945 (Q3H53_002787) - 2923728..2924183 (-) 456 WP_002742379.1 DUF29 domain-containing protein -
  Q3H53_RS13950 (Q3H53_002788) - 2924180..2924650 (-) 471 WP_002742380.1 DUF29 domain-containing protein -
  Q3H53_RS13955 (Q3H53_002789) petL 2924723..2924824 (-) 102 WP_002742381.1 cytochrome b6-f complex subunit PetL -
  Q3H53_RS13960 (Q3H53_002790) radA 2924870..2926396 (-) 1527 WP_002742386.1 DNA repair protein RadA Machinery gene
  Q3H53_RS13965 (Q3H53_002791) rpaB 2926630..2927358 (+) 729 WP_002734727.1 response regulator transcription factor RpaB -
  Q3H53_RS13970 (Q3H53_002792) - 2927368..2928009 (+) 642 WP_002742388.1 cofactor assembly of complex C subunit B -
  Q3H53_RS13975 (Q3H53_002793) - 2928064..2928192 (-) 129 WP_002732415.1 DUF4277 domain-containing protein -
  Q3H53_RS24565 - 2928654..2928743 (+) 90 Protein_2778 peptide deformylase -
  Q3H53_RS13985 (Q3H53_002795) folE 2929205..2929861 (+) 657 WP_002791327.1 GTP cyclohydrolase I FolE -
  Q3H53_RS13990 (Q3H53_002796) hemB 2929978..2930958 (+) 981 WP_002742392.1 porphobilinogen synthase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54908.42 Da        Isoelectric Point: 4.9662

>NTDB_id=861073 Q3H53_RS13960 WP_002742386.1 2924870..2926396(-) (radA) [Microcystis aeruginosa PCC 7806]
MAKSRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQRNPQPRISVRFSEITQYE
QERFPSGYGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVTNQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVPVE
SENNGNGKEKKASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRECTSALMQVA
KRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGIFEMVDHGLVEVENPSELFL
GNRDEFSPGTATVVACEGTRPIVVELQALVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGV
EEPAADLGVAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPRGQVYPEDVGLEIVPVGK
VIEAIVAAIPPQQRFGEDIEEEEGEGQE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=861073 Q3H53_RS13960 WP_002742386.1 2924870..2926396(-) (radA) [Microcystis aeruginosa PCC 7806]
ATGGCGAAATCGCGAACAATATATATCTGTAGCGCTTGTGGGGCGGAATCTCCCCAATGGTTGGGAAAATGCCCCAGTTG
TGACACCTACGGGACGCTAGAAGAACAAGTGATGGCTGGTGGCAATAATCCGGCGGGAAATCGCCCAGGATGGCAAAATA
GTCGCCCAAATAACGGCAAAGGACAACGCAACCCGCAACCGCGCATCTCGGTGCGCTTCTCGGAAATTACCCAGTATGAA
CAGGAACGTTTTCCCTCTGGTTACGGGGAATTCGATCGCGTTCTCGGTGGCGGCATTGTCCCCGGTTCTCTTGTACTAAT
CGGCGGCGATCCGGGTATCGGCAAATCGACGCTTTTACTGCAAGTTACCAACCAACTCGCCCAAAGATTACCGCGCATCC
TCTACGTTTCTGCCGAAGAATCGGGACAACAGATTAAACTGCGGGCTGCCCGTTTGGGGGTGGGAGTGGTTCCCGTGGAG
TCGGAAAATAACGGCAATGGCAAGGAGAAAAAAGCCTCTGAATCAACCGCAGAACTCGATAATCATCTCTACGTTCTGCC
AGAAACCGATTTAGAGGAAATTTTGCGGGAATTAGAATCTTTACGCCCACAGGTGGCGGTAATTGACAGTATTCAAACTC
TTTATTTTGGGGCGTTAACTTCCGCACCGGGATCCGTCGCCCAAGTTCGCGAATGTACCTCCGCCTTGATGCAGGTGGCA
AAACGGGAGAATATTACTTTATTAATTGTCGGTCATGTGACTAAAGAAGGGGCGATCGCTGGTCCGCGAGTTTTGGAACA
TTTGGTCGATACGGTGTTATATTTTGAAGGCGATCGCTATGCCTCCCATCGTCTCTTAAGATCGGTGAAAAACCGTTTTG
GGGCAACCCATGAGATCGGTATTTTCGAGATGGTGGACCACGGTTTGGTGGAAGTGGAAAACCCCTCAGAATTATTTTTA
GGCAATCGCGACGAATTTTCCCCGGGTACGGCGACGGTGGTAGCCTGTGAAGGTACACGCCCGATTGTGGTGGAGTTACA
GGCATTAGTTAGCCCTACCAGTTATGCTTCCCCCCGAAGATCGACTACTGGCATAGAATACAACCGATTACAGCAAATTC
TCGCTGTTTTAGAAAAGCGCGTCGGCATTCCTTTATCGAAATTAGATGCCTATGTTGCCTCCGCGGGAGGGTTGGGAGTG
GAAGAACCGGCGGCGGATTTGGGAGTTGCGATCGCTGTTGTCGCTAGTTTTCGCGATCGAGTCGTGGATCCGCGCACAGT
CTTAATTGGGGAAGTGGGATTAGGCGGACAAGTGCGCTTAGTGTCGCAAATGGAACTAAGATTAAAAGAAGCGGCGAAAT
TAGGCTTTAAACGGGCGATTGTCCCCAGAGGTCAAGTTTATCCCGAAGATGTGGGCTTAGAAATTGTTCCAGTCGGCAAG
GTAATCGAGGCAATTGTCGCCGCAATCCCCCCCCAGCAGCGCTTTGGGGAAGATATAGAAGAGGAGGAAGGGGAAGGGCA
AGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(401-463)

KaiC (ATPase)

(85-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822L4U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.924

95.866

0.488
  radA Streptococcus mitis SK321

46.555

94.291

0.439
  radA Streptococcus pneumoniae D39

47.21

91.732

0.433
  radA Streptococcus pneumoniae TIGR4

47.21

91.732

0.433
  radA Streptococcus mitis NCTC 12261

47.21

91.732

0.433
  radA Streptococcus pneumoniae R6

47.21

91.732

0.433
  radA Streptococcus pneumoniae Rx1

47.21

91.732

0.433