Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   Q4437_RS20130 Genome accession   NZ_CP130652
Coordinates   1037672..1038769 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain HZ     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032672..1043769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS20100 (Q4437_20100) - 1032810..1033787 (+) 978 WP_005477354.1 Gfo/Idh/MocA family protein -
  Q4437_RS20105 (Q4437_20105) - 1033858..1035195 (-) 1338 WP_005477179.1 MATE family efflux transporter -
  Q4437_RS20110 (Q4437_20110) - 1035318..1035632 (-) 315 WP_005453573.1 DUF496 family protein -
  Q4437_RS20115 (Q4437_20115) - 1035960..1036175 (+) 216 WP_005477197.1 hypothetical protein -
  Q4437_RS20120 (Q4437_20120) - 1036352..1037002 (+) 651 WP_005477153.1 YceH family protein -
  Q4437_RS20125 (Q4437_20125) - 1036999..1037319 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  Q4437_RS20130 (Q4437_20130) luxP 1037672..1038769 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  Q4437_RS20135 (Q4437_20135) luxQ 1038769..1041345 (+) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  Q4437_RS20140 (Q4437_20140) - 1041556..1042011 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  Q4437_RS20145 (Q4437_20145) - 1042049..1043104 (+) 1056 WP_005477158.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=860937 Q4437_RS20130 WP_005463467.1 1037672..1038769(+) (luxP) [Vibrio parahaemolyticus strain HZ]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=860937 Q4437_RS20130 WP_005463467.1 1037672..1038769(+) (luxP) [Vibrio parahaemolyticus strain HZ]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGAGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCGCTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGCAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644