Detailed information NTG0860919

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Q4437_RS12520
• Genome accession: NZ_CP130651
• Coordinates: 2701106..2702095 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain HZ
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2696106..2707095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q4437_RS12505 (Q4437_12505)	recA	2696655..2697698 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
Q4437_RS12510 (Q4437_12510)	pncC	2697899..2698381 (-)	483	WP_005478554.1	nicotinamide-nucleotide amidase	-
Q4437_RS12515 (Q4437_12515)	mutS	2698466..2701027 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
Q4437_RS12520 (Q4437_12520)	rpoS	2701106..2702095 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
Q4437_RS12525 (Q4437_12525)	-	2702176..2703099 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
Q4437_RS12530 (Q4437_12530)	-	2703114..2703740 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Q4437_RS12535 (Q4437_12535)	surE	2703740..2704516 (-)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
Q4437_RS12540 (Q4437_12540)	truD	2704516..2705559 (-)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
Q4437_RS12545 (Q4437_12545)	ispF	2705606..2706082 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Q4437_RS12550 (Q4437_12550)	ispD	2706100..2706804 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Q4437_RS12555 (Q4437_12555)	ftsB	2706806..2707087 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=860919 Q4437_RS12520 WP_005478537.1 2701106..2702095(-) (rpoS) [Vibrio parahaemolyticus strain HZ]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=860919 Q4437_RS12520 WP_005478537.1 2701106..2702095(-) (rpoS) [Vibrio parahaemolyticus strain HZ]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851