Detailed information NTG0860897

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: Q4437_RS01190
• Genome accession: NZ_CP130651
• Coordinates: 255248..256255 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain HZ
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 250248..261255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q4437_RS01160 (Q4437_01160)	zapB	250417..250659 (+)	243	WP_005481417.1	cell division protein ZapB	-
Q4437_RS01165 (Q4437_01165)	rraA	250764..251276 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
Q4437_RS01170 (Q4437_01170)	-	251353..252270 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
Q4437_RS01175 (Q4437_01175)	hslU	252455..253786 (-)	1332	WP_005457198.1	HslU--HslV peptidase ATPase subunit	-
Q4437_RS01180 (Q4437_01180)	hslV	253810..254361 (-)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
Q4437_RS01185 (Q4437_01185)	ftsN	254526..255071 (-)	546	WP_005481405.1	cell division protein FtsN	-
Q4437_RS01190 (Q4437_01190)	cytR	255248..256255 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
Q4437_RS01195 (Q4437_01195)	priA	256588..258792 (-)	2205	WP_005481427.1	primosomal protein N'	-
Q4437_RS01200 (Q4437_01200)	rpmE	259087..259308 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
Q4437_RS01205 (Q4437_01205)	rpsJ	259766..260077 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
Q4437_RS01210 (Q4437_01210)	rplC	260092..260721 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=860897 Q4437_RS01190 WP_005481416.1 255248..256255(-) (cytR) [Vibrio parahaemolyticus strain HZ]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=860897 Q4437_RS01190 WP_005481416.1 255248..256255(-) (cytR) [Vibrio parahaemolyticus strain HZ]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904