Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAD56_RS07190 Genome accession   NZ_CP130625
Coordinates   1493066..1494379 (-) Length   437 a.a.
NCBI ID   WP_373930663.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488066..1499379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD56_RS07160 (QAD56_07140) nadC 1488529..1489350 (-) 822 WP_373930657.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QAD56_RS07165 (QAD56_07145) nadA 1489350..1490360 (-) 1011 WP_373930658.1 quinolinate synthase NadA -
  QAD56_RS07170 (QAD56_07150) - 1490347..1491153 (-) 807 WP_373930660.1 phosphatidylserine decarboxylase -
  QAD56_RS07175 (QAD56_07155) - 1491150..1491653 (-) 504 WP_021306504.1 DUF6115 domain-containing protein -
  QAD56_RS07180 (QAD56_07160) - 1491666..1492160 (-) 495 WP_373930661.1 hypothetical protein -
  QAD56_RS07185 (QAD56_07165) mqnP 1492153..1492995 (-) 843 WP_231220876.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAD56_RS07190 (QAD56_07170) comEC/comE3 1493066..1494379 (-) 1314 WP_373930663.1 ComEC/Rec2 family competence protein Machinery gene
  QAD56_RS07195 (QAD56_07175) - 1494376..1495836 (-) 1461 WP_373930664.1 replicative DNA helicase -
  QAD56_RS07200 (QAD56_07180) - 1495847..1497241 (-) 1395 WP_373930666.1 NAD(P)H-hydrate dehydratase -
  QAD56_RS07205 (QAD56_07185) crdS 1497244..1498446 (-) 1203 WP_373931634.1 copper-sensing histidine kinase CrdS -
  QAD56_RS07210 (QAD56_07190) crdR 1498412..1499053 (-) 642 WP_220895980.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50216.12 Da        Isoelectric Point: 9.8315

>NTDB_id=860766 QAD56_RS07190 WP_373930663.1 1493066..1494379(-) (comEC/comE3) [Helicobacter pylori strain BS08]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGII
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFLVRSFQVISLS
ALVFLNMFIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISVYSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=860766 QAD56_RS07190 WP_373930663.1 1493066..1494379(-) (comEC/comE3) [Helicobacter pylori strain BS08]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTCACAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATAATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAGTTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAACCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGTTCATTATTGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCCCA
TCTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTATTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-381)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947