Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAD56_RS00010 Genome accession   NZ_CP130625
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_373930792.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS08     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD56_RS00005 (QAD56_00005) dnaA 1..1368 (+) 1368 WP_373930790.1 chromosomal replication initiator protein DnaA -
  QAD56_RS00010 (QAD56_00010) comH 1588..3021 (+) 1434 WP_373930792.1 competence protein Machinery gene
  QAD56_RS00020 (QAD56_00020) - 3201..3953 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  QAD56_RS00025 (QAD56_00025) - 3950..4585 (-) 636 WP_000668030.1 outer membrane protein -
  QAD56_RS00030 (QAD56_00030) - 4589..4942 (-) 354 WP_000837002.1 hypothetical protein -
  QAD56_RS00035 (QAD56_00035) recG 5024..6895 (+) 1872 WP_373930795.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54651.56 Da        Isoelectric Point: 7.0430

>NTDB_id=860752 QAD56_RS00010 WP_373930792.1 1588..3021(+) (comH) [Helicobacter pylori strain BS08]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQSKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPLAT
PNKISSTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADINEHHESNENRDSVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=860752 QAD56_RS00010 WP_373930792.1 1588..3021(+) (comH) [Helicobacter pylori strain BS08]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAATACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAGCAAGCCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCACTAATGAAGTTAAAACGCCCACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACCATGAAAGCAATGAGAATAGAGATAGTGTGGAAAAACAAGCAATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAAAGTGAATATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGTCCCAAACAAGACGATCAAGTAG
AGCCGACTTTCTATGAAACCAGCGAATTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

93.111

100

0.935