Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP04_RS07055 Genome accession   NZ_CP130623
Coordinates   1480835..1481098 (-) Length   87 a.a.
NCBI ID   WP_120824057.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475835..1486098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS07040 (QAP04_07010) - 1476809..1478149 (-) 1341 WP_373961264.1 COG3014 family protein -
  QAP04_RS07050 (QAP04_07020) comB4 1478470..1480833 (-) 2364 WP_373961265.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP04_RS07055 (QAP04_07025) comB3 1480835..1481098 (-) 264 WP_120824057.1 competence protein ComB Machinery gene
  QAP04_RS07060 (QAP04_07030) comB2 1481098..1481379 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP04_RS07065 (QAP04_07035) - 1481525..1482352 (-) 828 WP_373961266.1 DUF5718 family protein -
  QAP04_RS07070 (QAP04_07040) - 1482445..1483497 (-) 1053 WP_373961267.1 argininosuccinate synthase domain-containing protein -
  QAP04_RS07075 (QAP04_07045) dnaG 1483494..1485173 (-) 1680 WP_373961268.1 DNA primase -
  QAP04_RS07080 (QAP04_07050) groES 1485458..1485814 (+) 357 WP_000671945.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=860750 QAP04_RS07055 WP_120824057.1 1480835..1481098(-) (comB3) [Helicobacter pylori strain BS04]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSRIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=860750 QAP04_RS07055 WP_120824057.1 1480835..1481098(-) (comB3) [Helicobacter pylori strain BS04]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAGAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977