Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP04_RS00750 Genome accession   NZ_CP130623
Coordinates   160932..162245 (+) Length   437 a.a.
NCBI ID   WP_373961422.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 155932..167245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS00730 (QAP04_00730) crdR 156252..156893 (+) 642 WP_373961419.1 copper response regulator transcription factor CrdR -
  QAP04_RS00735 (QAP04_00735) crdS 156859..158061 (+) 1203 WP_373961785.1 copper-sensing histidine kinase CrdS -
  QAP04_RS00740 (QAP04_00740) - 158064..159458 (+) 1395 WP_373961420.1 NAD(P)H-hydrate dehydratase -
  QAP04_RS00745 (QAP04_00745) - 159469..160935 (+) 1467 WP_373961421.1 replicative DNA helicase -
  QAP04_RS00750 (QAP04_00750) comEC/comE3 160932..162245 (+) 1314 WP_373961422.1 ComEC/Rec2 family competence protein Machinery gene
  QAP04_RS00755 (QAP04_00755) mqnP 162274..163158 (+) 885 WP_373961423.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP04_RS00760 (QAP04_00760) - 163151..163645 (+) 495 WP_194149338.1 hypothetical protein -
  QAP04_RS00765 (QAP04_00765) - 163658..164164 (+) 507 WP_000953107.1 DUF6115 domain-containing protein -
  QAP04_RS00770 (QAP04_00770) - 164158..164961 (+) 804 WP_373961424.1 phosphatidylserine decarboxylase -
  QAP04_RS00775 (QAP04_00775) nadA 164951..165961 (+) 1011 WP_373961425.1 quinolinate synthase NadA -
  QAP04_RS00780 (QAP04_00780) nadC 165961..166782 (+) 822 WP_373961426.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50244.21 Da        Isoelectric Point: 9.9190

>NTDB_id=860734 QAP04_RS00750 WP_373961422.1 160932..162245(+) (comEC/comE3) [Helicobacter pylori strain BS04]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLSLNFYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGRIKPCSFLESLRSCFFQTYSFSLTRKQDFKSRLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFWMRSFQAIALS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNVLSMPLTIPTIPVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPGLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=860734 QAP04_RS00750 WP_373961422.1 160932..162245(+) (comEC/comE3) [Helicobacter pylori strain BS04]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTATCACTCAATTTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTATTACAATACCCCAAAACGAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAGGATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTCTAACACGAAAACAGGATTTCAAATCGCGTT
TGCGCCATTTCATTGACAGCGCCCATTCAAACGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTACTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTGGATGCGATCGTTTCAAGCGATCGCTTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATG
TTCTAAGCATGCCTTTAACAATCCCTACGATTCCGGTTTCTTCACCCTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTGGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947