Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAP04_RS00010 Genome accession   NZ_CP130623
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_373961321.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS00005 (QAP04_00005) dnaA 1..1368 (+) 1368 WP_373961320.1 chromosomal replication initiator protein DnaA -
  QAP04_RS00010 (QAP04_00010) comH 1589..3028 (+) 1440 WP_373961321.1 competence protein Machinery gene
  QAP04_RS00020 (QAP04_00020) - 3208..3960 (+) 753 WP_373961322.1 exodeoxyribonuclease III -
  QAP04_RS00025 (QAP04_00025) - 3957..4592 (-) 636 WP_000668053.1 outer membrane protein -
  QAP04_RS00030 (QAP04_00030) - 4596..4943 (-) 348 WP_373961323.1 hypothetical protein -
  QAP04_RS00035 (QAP04_00035) recG 5025..6896 (+) 1872 WP_373961324.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54810.70 Da        Isoelectric Point: 6.8744

>NTDB_id=860731 QAP04_RS00010 WP_373961321.1 1589..3028(+) (comH) [Helicobacter pylori strain BS04]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHMSTAIVYQSLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKPHSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
ITPSKTSPTNEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADASENNESNENKDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQAEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESNEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=860731 QAP04_RS00010 WP_373961321.1 1589..3028(+) (comH) [Helicobacter pylori strain BS04]
ATGAAAAAAACCCTTTGTCTATCTTTCTTTCTGACCTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCATATGTCCACTGCAATTGTCTATCAATCTCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCATCCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
ATAACTCCTAGCAAAACAAGCCCCACTAATGAAGTTAAAACGCCAACAAACGACACCAAACCCCCTTTAAAACATTCTTC
AGAAGATCAAGAAAACAACCTTTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATGCGA
GTGAAAACAATGAAAGCAACGAAAATAAGGACAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
AACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGTAAAAGAGCCAGAGCAAGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCTATTTATGAGCGCCCCAAACAAGACGACC
AAGCAGAGCCGACTTTCTATGAAACCAGCGAATTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAATGA
ATATAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.616

100

0.956