Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WCU04_RS15085 Genome accession   NZ_CP147559
Coordinates   3058588..3059217 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain GN04096     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3053588..3064217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU04_RS15070 (WCU04_15070) helD 3053830..3055884 (-) 2055 WP_001295938.1 DNA helicase IV -
  WCU04_RS15075 (WCU04_15075) yccF 3056007..3056453 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WCU04_RS15080 (WCU04_15080) yccS 3056463..3058625 (+) 2163 WP_000875041.1 YccS family putative transporter -
  WCU04_RS15085 (WCU04_15085) sxy/tfoX 3058588..3059217 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WCU04_RS15090 (WCU04_15090) sulA 3059436..3059945 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  WCU04_RS15095 (WCU04_15095) ompA 3060301..3061353 (+) 1053 WP_001346420.1 porin OmpA -
  WCU04_RS15100 (WCU04_15100) matP 3061429..3061881 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  WCU04_RS15105 (WCU04_15105) ycbZ 3062067..3063827 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=860728 WCU04_RS15085 WP_000839151.1 3058588..3059217(-) (sxy/tfoX) [Escherichia coli strain GN04096]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=860728 WCU04_RS15085 WP_000839151.1 3058588..3059217(-) (sxy/tfoX) [Escherichia coli strain GN04096]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995