Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   Q3Y59_RS01750 Genome accession   NZ_CP130608
Coordinates   321595..322032 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain XDY66     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 316595..327032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y59_RS01715 (Q3Y59_01715) - 317176..317337 (-) 162 Protein_297 hypothetical protein -
  Q3Y59_RS01720 (Q3Y59_01720) - 317454..318656 (+) 1203 WP_072588306.1 GTP-binding protein -
  Q3Y59_RS01725 (Q3Y59_01725) - 318721..319857 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  Q3Y59_RS01730 (Q3Y59_01730) - 319872..320306 (+) 435 WP_003156592.1 RDD family protein -
  Q3Y59_RS01735 (Q3Y59_01735) - 320378..320698 (+) 321 WP_303303201.1 YckD family protein -
  Q3Y59_RS19685 - 320802..320918 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  Q3Y59_RS01740 (Q3Y59_01740) - 320923..321135 (+) 213 Protein_303 family 1 glycosylhydrolase -
  Q3Y59_RS01745 (Q3Y59_01745) nin/comJ 321175..321573 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  Q3Y59_RS01750 (Q3Y59_01750) nucA/comI 321595..322032 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  Q3Y59_RS01755 (Q3Y59_01755) hxlB 322391..322948 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  Q3Y59_RS01760 (Q3Y59_01760) hxlA 322945..323580 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  Q3Y59_RS01765 (Q3Y59_01765) - 323812..324174 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=860561 Q3Y59_RS01750 WP_003156588.1 321595..322032(-) (nucA/comI) [Bacillus velezensis strain XDY66]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=860561 Q3Y59_RS01750 WP_003156588.1 321595..322032(-) (nucA/comI) [Bacillus velezensis strain XDY66]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641