Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE55_RS06850 Genome accession   NZ_AP027445
Coordinates   1069759..1070274 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC291 isolate EC291     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064759..1075274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE55_RS06805 (MUTS14_13180) csrA 1065346..1065531 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QUE55_RS06835 (MUTS14_13190) yqaB 1066989..1067555 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE55_RS06840 (MUTS14_13200) yqaA 1067552..1067980 (+) 429 WP_001287454.1 YqaA family protein -
  QUE55_RS06845 (MUTS14_13210) gshA 1068053..1069609 (+) 1557 WP_053880895.1 glutamate--cysteine ligase -
  QUE55_RS06850 (MUTS14_13220) luxS 1069759..1070274 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE55_RS06855 (MUTS14_13230) emrB 1070338..1071876 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE55_RS06860 (MUTS14_13240) emrA 1071893..1073065 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE55_RS06865 (MUTS14_13250) emrR 1073192..1073722 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE55_RS06870 (MUTS14_13260) ygaH 1073813..1074148 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QUE55_RS06875 (MUTS14_13270) ygaZ 1074138..1074875 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=86047 QUE55_RS06850 WP_001130211.1 1069759..1070274(+) (luxS) [Escherichia coli strain EC291 isolate EC291]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=86047 QUE55_RS06850 WP_001130211.1 1069759..1070274(+) (luxS) [Escherichia coli strain EC291 isolate EC291]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGATGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731